DN617672

Overview
NameDN617672
Unique NameDN617672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:14..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = -1
Query:  284 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 778
            K +YA       + +  VF   +++D+  +T G G +G V RWG+  +  K  R   LR+V  +G W PA VS+ V +AGQ GYH RT+ NK++ K+     E              + P GGF +YG+V+ +Y++IKG   GP KR++ LR+    + S +   +I
Sbjct:  175 KFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 64/179 (35.75%), Postives = 94/179 (52.51%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            K +YA       + +  VF+   +ID   +T GKG +G   RWG+  +  K  R   LR++  +G +   RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I  I   SK G
Sbjct:  175 KFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = -1
Query:  329 YAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 769
            YA G   K++    VF+  +++D+IGVTKGKG +GV+ R+GV  LPR  K  +G R+   +G   PA V +T  R GQ G+H RTE NK++ K+   G E              ITP GGF HYGIV+  Y++I+G   G  KR++  R
Sbjct:  184 YASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKELPRWHKHRKGSRRTGTVGP-KPA-VMYTQPRMGQMGFHRRTEYNKRILKISDNGSE--------------ITPKGGFKHYGIVRSGYMLIEGSTPGVVKRLIAFR 316          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            + +YA     K I  +   +  + +D++ VTKGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K  K G+++ T           I   GGF HYG+VK+DY+++ G   GP KR++ +R    ++     ++ +K+ +I   SK G
Sbjct:  168 RFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK-GEDADT-----------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 63/178 (35.39%), Postives = 96/178 (53.93%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            +++YA     KQI      +  + +D++ +TKGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K G             ++ E D I   GGF HYG VK+DY+++ G   G  KR++ +R    ++     +EE+K+++I   SK G
Sbjct:  168 RLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYG-------------NKEEVDSINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTE--KDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++ YA       I      +    +D+I VTKGKG++GVV R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+H RT  N ++ K              FD  +   DI   GGF +YGIV++DY+++ G   GP KR++ +R     + +R A+E I++ ++   SK G
Sbjct:  166 RIKYAKERLGSNISFSDFSKPGNFVDVIAVTKGKGFQGVVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  191 QLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METBU1.597e-2434.1350S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METBF1.597e-2435.7550S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_CALMQ1.597e-2441.6150S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_THEVO2.086e-2435.5950S ribosomal protein L3P OS=Thermoplasma volcaniu... [more]
RL3_THEAC3.558e-2435.3950S ribosomal protein L3P OS=Thermoplasma acidophi... [more]
RL3_PICTO3.558e-2435.7550S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_SULIY1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL1.035e-2336.3150S ribosomal protein L3P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTAAATTTAAAAATATTCAATAGAATAAAGCACGACCATCTCTTAA
AAAATAAAATAAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAA
AAACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTA
ACTATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATG
CGTCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCC
AAACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTA
AACGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTC
TTAGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAAT
ACCATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGT
CAAATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTG
TAAACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGC
TCTGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAG
CCACCTTACGCAGACCTCTGTGAGTCTTGCGAGGAAGGCGGGTAACACCC
CAACGGGTGACAACACCTTCATAACCTTTACCTTTCGTGACACCGATGAT
GTCAATCATCTCATCCTTCTGGAAAACAGCATCAACAGGAATTTGCTTTT
CAAAGAAGCCATATGCATAGTCAACTTT
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