DN617672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22 Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = -1 Query: 248 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 727 VF+ E D G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ + G + TP GGFP+YG V Y ++KG GP++R+V R ++ ++ RL + +++++ T+S G Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21 Identity = 64/179 (35.75%), Postives = 99/179 (55.31%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 +++Y + V VF++ +++DIIGVTKG G++GV+ R+GV LPR K +G RKV G V + GQ G+H RTE NK++ K+ D T K I P GGF YG+VK+ YL+++G +G KR + LR + +++L + K+ ++D +SK G Sbjct: 181 QLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVIKRYGVQELPRWHKHRKGSRKVGTKGP--SLGTPSYVPQPGQMGFHRRTEYNKRILKIS-------------DDT-KLINPKGGFVRYGLVKNTYLLVQGSTIGSIKRPLFLRYPIRPYSAQLPVP--KVTYVDVNSKQG 341
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21 Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = -1 Query: 320 KVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 778 ++D+A E + ++ +F+ E D+ GVTKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+G + T GGF +YG V Y ++KG GP KR+V R ++ Sbjct: 175 RLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19 Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = -1 Query: 248 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 736 + +F+ E +D GVTKGKG +G V R+GV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ ++G G + T GGF YG V Y +IKG GP +R++ R ++ + S + +++++ T+S G Sbjct: 191 ISDIFRAGEYLDAAGVTKGKGTQGPVKRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDEP---------------TVDGGFVGYGEVDGPYALIKGSLPGPDQRLLRFRTAV--RPSDQPRLDPEVRYVSTASNQG 338 The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bpback to top |