DN617666

Overview
NameDN617666
Unique NameDN617666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9443 contig Csv1_Contig9443:178..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617666 vs. ExPASy Swiss-Prot
Match: HEM2_PONAB (Delta-aminolevulinic acid dehydratase OS=Pongo abelii GN=ALAD PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  244 PAMRA-SFQETNLSPENFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIRLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQA 663
            P +RA     T L+  N +YP+F+ +  +D  PI ++PG  R G    L + +    + G+  V++F       K   G  A ++       I LL+  +P+L++  DV L PY+S GH G++ E+G    +E+  +L + A
Sbjct:   14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPIASLPGVARYGVNR-LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFQAEESRQRLAEVA 154          
BLAST of DN617666 vs. ExPASy Swiss-Prot
Match: HEM2_MYCTU (Delta-aminolevulinic acid dehydratase OS=Mycobacterium tuberculosis GN=hemB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 45/138 (32.61%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  235 RKSPAMRASFQETNLSPENFVYPLFIHEG-EEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIR-LLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 642
            R + AMR    +T+L P + V P+F+ +G +E  PI +MPG  +   R  L +  A A   GV  ++LF    D  K   G    + +G++   +R L KD     V+  D  LD ++  GH G++ + G + ND TV
Sbjct:   15 RSTVAMRRLVAQTSLEPRHLVLPMFVADGIDEPRPITSMPGVVQ-HTRDSLRRAAAAAVAAGVGGLMLFGVPRDQDKDGVGSAGIDPDGILNVALRDLAKDLGEATVLMADTCLDEFTDHGHCGVLDDRGRVDNDATV 151          
BLAST of DN617666 vs. ExPASy Swiss-Prot
Match: HEM2_HUMAN (Delta-aminolevulinic acid dehydratase OS=Homo sapiens GN=ALAD PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  244 PAMRA-SFQETNLSPENFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIRLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQA 663
            P +RA     T L+  N +YP+F+ +  +D  PI ++PG  R G +  L + +    + G+  V++F       K   G  A ++       I LL+  +P+L++  DV L PY+S GH G++ E+G    +E+  +L + A
Sbjct:   14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVA 154          
The following BLAST results are available for this feature:
BLAST of DN617666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HEM2_PONAB7.602e-1129.58Delta-aminolevulinic acid dehydratase OS=Pongo abe... [more]
HEM2_MYCTU7.602e-1132.61Delta-aminolevulinic acid dehydratase OS=Mycobacte... [more]
HEM2_HUMAN9.928e-1129.58Delta-aminolevulinic acid dehydratase OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617666 ID=DN617666; Name=DN617666; organism=Citrus sinensis; type=EST; length=665bp
TTAAGGTTCAATTGCGTCAAAACGAAAACCGTAACGACACGTCGTTTGGT
TGTTACAGCAAGCAAATCGCACGATGGAACGACGAAGAAGCTTGGAATCA
GTGACGCTGAGTGTGAGGCGGCTGTTGTGGCGGGAAATATTCCAGAAGCG
CCTCCCGTGCCACCAAAGCCTGCCGCGCCAGCTGGAACTCCTGTAGTTCC
TTCTCTTCCACTTAGTCGGCGGCCTCGCCGTAATCGGAAGTCCCCCGCAA
TGAGAGCATCCTTCCAGGAAACAAATCTTTCACCGGAAAATTTTGTATAT
CCACTTTTTATTCATGAAGGAGAGGAGGACACGCCTATTGGGGCCATGCC
CGGTTGTTATAGACTTGGTTGGAGACATGGACTTGTTCAAGAGGTGGCGA
AAGCACGGGATGTTGGTGTGAATAGTGTTGTGCTCTTCCCCAAAGTTCCA
GATGCTTTGAAGTCTCCCACAGGAGATGAAGCATACAATGATAATGGTCT
GGTGCCTCGTACAATACGGCTGCTCAAGGATAGATACCCTGATCTTGTAA
TTTACACTGATGTTGCTTTAGATCCATATTCCTCTGATGGGCATGATGGT
ATTGTCAGAGAAGACGGAGTCATTATGAATGATGAAACAGTGCATCAATT
ATGTAAACAAGCTGT
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