DN617665

Overview
NameDN617665
Unique NameDN617665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_BRAJA (Delta-aminolevulinic acid dehydratase OS=Bradyrhizobium japonicum GN=hemB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.763e-33
Identity = 77/145 (53.10%), Postives = 100/145 (68.97%), Query Frame = -3
Query:  213 GFQHVSIMSYTAKYASSFYGPFREALESNPRF-GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 644
            G   V IM+Y AKYAS+FYGPFR+A+ S     GDK+TY +      AN  EAL E + D SEGAD+++VKPG+PYLDV+R ++D + +P  AYQVSGEY+MI A      +D  R MMESL+  +RAGAD +L+YFA +AA  L
Sbjct:  209 GLIDVQIMAYAAKYASAFYGPFRDAIGSAKTLTGDKRTYQMDS----ANTDEALREVELDISEGADMVMVKPGMPYLDVVRRVKDTFAMPTFAYQVSGEYAMIAAAAGNGWLDGDRAMMESLLAFKRAGADGVLSYFAPKAAEKL 349          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_SHIFL (Delta-aminolevulinic acid dehydratase OS=Shigella flexneri GN=hemB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 75/141 (53.19%), Postives = 102/141 (72.34%), Query Frame = -3
Query:  222 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 644
            GF+  +IMSY+ K+ASSFYGPFREA  S  + GD+K+Y +  +    N REA+ E+  DE++GAD L+VKP   YLD++R LR++  LPI AYQVSGEY+MIK       IDE++V++ESL  ++RAGAD+I +YFAL  A
Sbjct:  183 GFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPM----NRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLA 318          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_ECOLI (Delta-aminolevulinic acid dehydratase OS=Escherichia coli (strain K12) GN=hemB PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 75/141 (53.19%), Postives = 102/141 (72.34%), Query Frame = -3
Query:  222 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 644
            GF+  +IMSY+ K+ASSFYGPFREA  S  + GD+K+Y +  +    N REA+ E+  DE++GAD L+VKP   YLD++R LR++  LPI AYQVSGEY+MIK       IDE++V++ESL  ++RAGAD+I +YFAL  A
Sbjct:  183 GFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPM----NRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLA 318          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_STAAU (Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus GN=hemB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.701e-33
Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  240 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 644
            G+ ++ IMSY  KYASSF+GPFR+A +S P FGD+KTY +      AN  EAL E ++D  EG D+++VKP L YLD++R +++   +P+ AY VSGEYSM KA      IDE+RV+ME ++ ++RAGAD+I+TY
Sbjct:  183 GYYNIPIMSYGVKYASSFFGPFRDAADSAPSFGDRKTYQMDP----ANRLEALRELESDLKEGCDMMIVKPALSYLDIVRDVKNHTNVPVVAYNVSGEYSMTKAAAQNGWIDEERVVMEQMVSMKRAGADMIITY 313          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_RHOCA (Delta-aminolevulinic acid dehydratase OS=Rhodobacter capsulatus GN=hemB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = -3
Query:  213 GFQHVSIMSYTAKYASSFYGPFREALESNPRF-GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 644
            G + ++I+SY AKYAS+FYGPFR+A+ ++    GDKKTY +      AN  EAL     D +EGAD+++VKPG+PYLD++R ++D + +P  AYQVSGEY+M+ A      ++  +VM+ESLM  RRAG D +LTYFA  AA+ +
Sbjct:  190 GHKDIAILSYAAKYASAFYGPFRDAVGASSALKGDKKTYQMNP----ANSAEALRNVARDIAEGADMVMVKPGMPYLDIVRQVKDAFGMPTYAYQVSGEYAMLMAAVQNGWLNHDKVMLESLMAFRRAGCDGVLTYFAPAAAKLI 330          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_MYCTU (Delta-aminolevulinic acid dehydratase OS=Mycobacterium tuberculosis GN=hemB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = -3
Query:  222 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 644
            G+  V I++Y AK+AS+FYGPFREA+ S+   GD++TY     +   N  EAL E + D  EGADI++VKP + YLDV+    D  P+P+AAYQVSGEY+MI+A  A   IDE+  ++ESL  +RRAGADI+LTY+A+ AA
Sbjct:  190 GYIDVVILAYAAKFASAFYGPFREAVSSSLS-GDRRTYQ----QEPGNAAEALREIELDLDEGADIVMVKPAMGYLDVVAAAADVSPVPVAAYQVSGEYAMIRAAAANNWIDERAAVLESLTGIRRAGADIVLTYWAVDAA 325          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_RAT (Delta-aminolevulinic acid dehydratase OS=Rattus norvegicus GN=Alad PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 73/142 (51.41%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  213 VSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQA-DESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 632
            VS+MSY+AK+AS FYGPFR+A +S+P FGD++ Y     +L    R   + A A D  EGADIL+VKPGLPYLD+++ ++DK+P LP+A YQVSGE++M+  G      D +  ++ES+   RRAGADII+TYFA Q  + L
Sbjct:  191 VSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCY-----QLPPGARGLALRAVARDIQEGADILMVKPGLPYLDMVQEVKDKHPELPLAVYQVSGEFAMLWHGAKAGAFDLRTAVLESMTAFRRAGADIIITYFAPQLLKWL 327          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_MOUSE (Delta-aminolevulinic acid dehydratase OS=Mus musculus GN=Alad PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 72/142 (50.70%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  213 VSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQA-DESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 632
            VS+MSY+AK+AS FYGPFR+A +S+P FGD++ Y     +L    R   + A A D  EGAD+L+VKPGLPYLD++R ++DK+P LP+A YQVSGE++M+  G      D +  ++E++   RRAGADII+TYFA Q  + L
Sbjct:  191 VSVMSYSAKFASCFYGPFRDAAQSSPAFGDRRCY-----QLPPGARGLALRAVARDIQEGADMLMVKPGLPYLDMVREVKDKHPELPLAVYQVSGEFAMLWHGAQAGAFDLRTAVLETMTAFRRAGADIIITYFAPQLLKWL 327          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_METTH (Delta-aminolevulinic acid dehydratase OS=Methanobacterium thermoautotrophicum GN=hemB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 70/137 (51.09%), Postives = 98/137 (71.53%), Query Frame = -3
Query:  234 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 644
            GFQ   IMSY  KYAS+FY PFR A+ S P FGD+++Y +      AN  EAL+EA+ D  EGADIL+VKP L YLDVI  +R+++ +P+AAY VSGEYSM+KA      + ++ +  ES++ ++RAGAD+I+++FA
Sbjct:  188 GFQDTLIMSYAVKYASAFYAPFRGAVSSAPAFGDRRSYQMDP----ANIDEALIEAELDLREGADILMVKPALAYLDVIGKVRERFSVPLAAYNVSGEYSMLKAAIKSGYLTDEAI-YESILSIKRAGADLIISHFA 319          
BLAST of DN617665 vs. ExPASy Swiss-Prot
Match: HEM2_STRCO (Delta-aminolevulinic acid dehydratase OS=Streptomyces coelicolor GN=hemB PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.802e-31
Identity = 73/144 (50.69%), Postives = 101/144 (70.14%), Query Frame = -3
Query:  213 GFQHVSIMSYTAKYASSFYGPFREALESNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 644
            G + V+I++YTAKYAS+FYGPFREA+ S+ + GD+KTY     +  AN RE+L E   D  EGAD+++VKP  PYLD++  + +   +P+AAYQ+SGEYSMI+A      ID  R ++ESL  ++RAGA  ILTY+A + AR L
Sbjct:  191 GREDVAILAYTAKYASAFYGPFREAVGSSLK-GDRKTYQ----QDSANARESLRELALDLEEGADMVMVKPAGPYLDILAKVAEASDVPVAAYQISGEYSMIEAAAEKGWIDRDRAILESLTGIKRAGARNILTYWATEVARTL 329          
The following BLAST results are available for this feature:
BLAST of DN617665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HEM2_BRAJA1.763e-3353.10Delta-aminolevulinic acid dehydratase OS=Bradyrhiz... [more]
HEM2_SHIFL2.303e-3353.19Delta-aminolevulinic acid dehydratase OS=Shigella ... [more]
HEM2_ECOLI2.303e-3353.19Delta-aminolevulinic acid dehydratase OS=Escherich... [more]
HEM2_STAAU6.701e-3351.11Delta-aminolevulinic acid dehydratase OS=Staphyloc... [more]
HEM2_RHOCA2.546e-3248.97Delta-aminolevulinic acid dehydratase OS=Rhodobact... [more]
HEM2_MYCTU2.546e-3252.48Delta-aminolevulinic acid dehydratase OS=Mycobacte... [more]
HEM2_RAT7.409e-3251.41Delta-aminolevulinic acid dehydratase OS=Rattus no... [more]
HEM2_MOUSE1.264e-3150.70Delta-aminolevulinic acid dehydratase OS=Mus muscu... [more]
HEM2_METTH1.264e-3151.09Delta-aminolevulinic acid dehydratase OS=Methanoba... [more]
HEM2_STRCO4.802e-3150.69Delta-aminolevulinic acid dehydratase OS=Streptomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617665 ID=DN617665; Name=DN617665; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTTTTTTTGACGCAAACATAAATTTAAGCACATTATTTATT
TCATCTATTCAGAGAGCACACTGCAAACAAATTTTGAAAATTTCCTTCAA
AATTTCAAATTCATTTTTCAATGTTAAGTACTAAAAAGGATAGGGCTTCT
AGAGCTTTATCAAAACTAACAACGCCTTATTACTCTGACAGTTCTCACCT
CTTCTCACCACATAAACATCTAGCAGCTTGTAGAGCAAAATATGTGAGGA
TGATATCAGCACCAGCCCGTCGAAGGCACATCAAGGACTCCATCATAACC
CTCTGCTCATCAATCATTTTGAGAGCACCACCAGCCTTGATCATTGAGTA
TTCACCAGATACCTGATATGCAGCAATCGGCAGAGGATATTTATCCCTGA
GAAGCCTAATGACATCCAAATAAGGAAGACCCGGTTTCACCAAAAGGATG
TCAGCTCCTTCTGATTCGTCTGCTTGGGCTTCAACTAGAGCCTCTCTGTA
ATTTGCATATAATTCAATAACTCTAATCACATACGTCTTTTTATCTCCAA
AACGTGGATTTGACTCTAGTGCTTCCCGAAATGGACCATAAAATGAACTT
GCATATTTGGCTGTATAGGACATGATAGAAACATGCTGAAAACCTT
back to top