DN617664

Overview
NameDN617664
Unique NameDN617664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5965 contig Csv1_Contig5965:44..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617664 vs. ExPASy Swiss-Prot
Match: NAC12_ARATH (NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = -3 
Query:  325 GYWKATGADKPIGK-PKTLCIKKALVFYAGKAPKGIKTNWIMHEYR-----PANVHRSPATKNNLRLDD--WVLCRLYNKKGRME-KHYPSDQKSIGFPELEEDRKPNINISRQEVALGMPPHQGSPAPMMNDLLHMDTSDS---VPRLQTDSSCSEHVL 768
            G+WKATG DK I    + + ++K LVFY G+AP G K++WIMHEYR      +N +    T++ +  ++  WV+CR++ KK   +    P    S    + EE++ P  + ++    L             + LL+MD + S   +P  QT +   + VL
Sbjct:   98 GFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKIDDCPKITLSSLPDDTEEEKGPTFHNTQNVTGLD------------HVLLYMDRTGSNICMPESQTTTQHQDDVL 245
The following BLAST results are available for this feature:
BLAST of DN617664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NAC12_ARATH5.835e-1131.25NAC domain-containing protein 12 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617664 ID=DN617664; Name=DN617664; organism=Citrus sinensis; type=EST; length=770bp
TTTTTTTAAAAAAATTTCTTCTACAATCTTGCACGAATAAGAATGCCCTA
CAATTGTGGTTTACAAAAGGATTATATAATACAGGACCTAGCATACTACG
ATGTATTGAACTTAAAATGGCTTCTGCAGAATCATAAAAAGGTCTTGATA
GGGTGATAACTGATCCATCTGATACTGAACTTGCGGGCCAAAAGGGTCGT
CTTGGAAGCTATTAGTGTCCATGTAGTTGAAATTGAACTGATTATAATCA
TCATTCAAGGCATTGCCTAGATCATTCCATTTGGGCATACTTTGGACCTC
CTTATCGCACGTGATCTCCGGCGACAACACGTGCTCGGAGCAACTCGAAT
CCGTCTGCAACCGGGGCACCGAGTCCGACGTATCCATATGTAATAGGTCA
TTCATCATTGGCGCAGGCGATCCCTGATGTGGAGGCATTCCTAATGCTAC
CTCTTGACGTGAAATGTTAATATTTGGTTTCCGATCCTCCTCCAGTTCTG
GGAATCCAATTGATTTTTGATCGCTGGGGTAATGTTTTTCCATCCTCCCC
TTCTTGTTGTACAATCGACATAATACCCAATCGTCAAGCCTTAGGTTGTT
TTTGGTGGCGGGGGATCTGTGAACATTAGCAGGGCGATATTCATGCATAA
TCCAATTAGTTTTGATTCCTTTAGGCGCTTTTCCAGCGTAGAACACAAGC
GCCTTTTTTATACAAAGAGTCTTCGGCTTCCCAATGGGCTTGTCCGCTCC
GGTCGCCTTCCAGTATCCGG
back to top