DN617663

Overview
NameDN617663
Unique NameDN617663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617663_ssr73 microsatellite DN617663_ssr73:73..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5965 contig Csv1_Contig5965:572..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617663 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  139 PPGFRFHPTDEELVNHYLCRKCAGLPISV--PIIAEIDLYKYDPWELPEMARYGEKE--WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI----GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANV 519
            P GFRF P DEE+V+HYL  K      S    +I+ +D+  ++PW+LP  +    ++  WYFFS ++ KY  G +  R   SG+WK TG    +    G  + +G K+ LVF   K   G KT+W+MHEY   ++
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVF---KNRDGSKTDWVMHEYHATSL 135          
BLAST of DN617663 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  130 LELPPGFRFHPTDEELVNHYLCRKCAGLPISVP--IIAEIDLYKYDPWELPEMARYGEKE--WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPK-TLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNKKGRMEK 606
            +E P G RF PTDEE+V  YL  K +    S     I  + + + DPWELP  +R   K+  W FF P++ KY  G +  R   SG+WK+TG  KPI + +  +G KK L+FY  K     K++W++HEY            +N  +  + LC++    G  EK
Sbjct:    1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKES---KSDWVIHEYH--------GFSHNQMMMTYTLCKVMFNGGMREK 153          
BLAST of DN617663 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  139 PPGFRFHPTDEELVNHYLCRKCAGLPISV--PIIAEIDLYKYDPWELPEMARYGEKE--WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI----GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNKKGRME 603
            P GFRF PTD E+V+ YL  K      S    +I+ +D+  +DPW+LP  +R   ++  WYFF  ++ KY  G R  R   SG+WK TG    I    G  + +G K+ LVF   K   G K++W MHEY     H + ++ N +    + LC++  K  R E
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY-----HATFSSPNQIM--TYTLCKVKFKGERRE 156          
BLAST of DN617663 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.931e-17
Identity = 56/162 (34.57%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  145 GFRFHPTDEELVNHYLCRKCAG---LPISVPIIAEIDLYKYDPWELPEMARYGEKE--WYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI---------GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNK 588
            GF F P DEELV HYL  K  G     + V I +E+++  YDPW L   ++Y  ++  WYFFS R+     G+R +R   SG WK TG    +         G    +G K+ LVF  G+ P   K++W++HE+    +     T        +V+CRL  K
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAI-SEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQRT--------YVICRLEYK 156          
The following BLAST results are available for this feature:
BLAST of DN617663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC4_ARATH3.440e-2037.78NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
NAC3_ARATH1.707e-1935.98NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC5_ARATH1.888e-1836.20NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC1_ARATH7.931e-1734.57NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617663 ID=DN617663; Name=DN617663; organism=Citrus sinensis; type=EST; length=613bp
AACCAGGAGCAAAACATATGAAAGACCAAGCGAGTGAGCGAGCAAGCGAG
CAAGCAGGAGAGCAAGCAAGAGAGAAGAAGAAGAAGAAGAAATCAATTAA
TTAGTTAGAAGATGATGAAGGGAGCAGAGCTAGAGTTACCGCCAGGTTTC
AGATTTCACCCGACAGACGAGGAGCTGGTGAATCACTATTTGTGTAGGAA
ATGTGCAGGGCTACCGATTTCTGTTCCTATTATTGCCGAGATTGATCTCT
ACAAATACGATCCTTGGGAGCTACCCGAAATGGCACGGTACGGCGAAAAG
GAGTGGTATTTCTTTTCTCCAAGGGACAGGAAATATCCAAACGGTTCAAG
GCCGAACCGGGCGGCCGGATCCGGATACTGGAAGGCGACCGGAGCGGACA
AGCCCATTGGGAAGCCGAAGACTCTTGGTATAAAAAAGGCGCTTGTGTTC
TACGCTGGAAAAGCGCCTAAAGGAATCAAAACTAATTGGATTATGCATGA
ATATCGCCCTGCTAATGTTCACAGATCCCCCGCCACCAAAAACAACCTAA
GGCTTGACGATTGGGTATTATGTCGATTGTACAACAAGAAGGGGAGGATG
GAAAAACATTACC
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