DN617662

Overview
NameDN617662
Unique NameDN617662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50A_PONAB (Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.404e-17
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  289 EDLIVWMRTAALPTFRKLYGKIEVDLEENDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 549
            ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+ VG + F L +   ++
Sbjct:  255 EDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVI 346          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50A_HUMAN (Cell cycle control protein 50A OS=Homo sapiens GN=TMEM30A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.404e-17
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  289 EDLIVWMRTAALPTFRKLYGKIEVDLEENDII-----DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 549
            ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+ VG + F L +   ++
Sbjct:  255 EDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVI 346          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50B_MOUSE (Cell cycle control protein 50B OS=Mus musculus GN=Tmem30b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = -1
Query:  283 EDLIVWMRTAALPTFRKLYGKIEVDLEENDI----IDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYL 549
            +D +VWMRTAALPTFRKLY +I        +      V +  NY   +F G K ++LS  SW+GGKN FLGIAYL VG LC  +     +VY+
Sbjct:  248 QDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGTYRVNITYNYPVRAFGGHKLIILSNISWMGGKNPFLGIAYLVVGSLCIVMGFVMLVVYI 340          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50B_HUMAN (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = -1
Query:  283 EDLIVWMRTAALPTFRKLYGKIEVDLEENDI----IDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYL 549
            +D +VWMRTAALPTFRKLY +I        +      V +  NY   +F G K L+ S+ SW+GGKN FLGIAYL VG LC        +VY+
Sbjct:  248 QDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYI 340          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: YN8S_YEAST (Uncharacterized protein YNR048W OS=Saccharomyces cerevisiae GN=YNR048W PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 55/138 (39.86%), Postives = 72/138 (52.17%), Query Frame = -1
Query:  232 SWAKKFSPSNFQNGTLIGGAHLDESIP-LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 642
            +WAK F      NG      + D++IP L   E   +WMRTAALP F KL  K E +     I    +E NY   SF G K  VL+T S +G  N+ LGI YL V G+    A+ F I  + KPR + D SYL++  +
Sbjct:  249 NWAKLFP-----NG------YTDDNIPDLQNWEQFKIWMRTAALPNFYKLAMKNETNGLGKGIYIADIELNYPVRSFYGTKSFVLTTNSIIGAGNEALGIVYLIVAGIATLFAILFLIKVIFKPRPMHDHSYLNFENS 375          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CDC50_YEAST (Cell division control protein 50 OS=Saccharomyces cerevisiae GN=CDC50 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  238 HLDESIP-LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWN 582
            + DE++P +   E+  VWMRTAA P F KL  K E          + +E NY    F G K  VL+T   +GG+N  LG+ YL V GLC    + F +  + +PR +GD +YL+++
Sbjct:  255 YTDENLPDIHTWEEFQVWMRTAAFPKFYKLTLKNESASLPKGKYQMNIELNYPISLFGGTKSFVLTTNGAIGGRNMSLGVLYLIVAGLCALFGIIFLVKLIFQPRAMGDHTYLNFD 370          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50C_MACFA (Cell cycle control protein 50C OS=Macaca fascicularis GN=TMEM30C PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  283 EDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN---TYSF-----SGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYL 549
            +D IVWMR AA PTF+KLYG++      +  I+ +   NY+   TY+F      G+K +VLST +W GG + FLG+AY   G + +  + +   +++
Sbjct:  239 DDFIVWMRAAAFPTFKKLYGRLN---RTHHFIEGLPAGNYSFNITYNFPVTRFQGEKSVVLSTLTWCGGNSLFLGLAYTVTGAITWLASFTMMAIHI 332          
The following BLAST results are available for this feature:
BLAST of DN617662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CC50A_PONAB1.404e-1747.83Cell cycle control protein 50A OS=Pongo abelii GN=... [more]
CC50A_HUMAN1.404e-1747.83Cell cycle control protein 50A OS=Homo sapiens GN=... [more]
CC50B_MOUSE3.127e-1747.31Cell cycle control protein 50B OS=Mus musculus GN=... [more]
CC50B_HUMAN6.967e-1747.31Cell cycle control protein 50B OS=Homo sapiens GN=... [more]
YN8S_YEAST5.898e-1639.86Uncharacterized protein YNR048W OS=Saccharomyces c... [more]
CDC50_YEAST1.453e-1437.93Cell division control protein 50 OS=Saccharomyces ... [more]
CC50C_MACFA8.813e-1237.11Cell cycle control protein 50C OS=Macaca fascicula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617662 ID=DN617662; Name=DN617662; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTGATGAAAACTAGTCATTGTATTGAGCTAATTCACAAATTAT
ACATAAGATTCACCAGGAACAACATCCTATTGTCCAAAAATTCAATAAAA
CAACCAGAATACTTTTTTAAACAGAGGAGATATTTTGTCATTAAATACCG
GTACACAAAATTACATCAACCACTTTTGAGATAGCCAATCCATCTACTCA
GGTTCCAGAAATTTGCTTAGTGCCCTCCTGGATTTCTGTTCCATGACAGG
TAGGAAGGATCTCCAAGTCGCCTTGGCTTTACCAGATATACTATAGTGAA
TGACAGGGCCAAAAAGAAGCACAAGCCTCCAACGGTGAGATAAGCAATGC
CAAGGAAGTCGTTCTTTCCACCAAGCCAGCTAGTGGTTGAAAGAACAAGC
TTCTTCTTGCCACTAAAACTGTACGTGTTGTAGTTGTTTTCCAATATCAC
ATCGATAATATCATTCTCTTCAAGATCCACCTCTATTTTCCCATACAGCT
TCCTAAAAGTGGGCAAAGCTGCTGTCCGCATCCAAACTATAAGGTCCTCT
TGCTTACTCAATGGTATGGATTCATCAAGATGTGCACCACCTATCAGAGT
CCCATTTTGGAAGTTACTAGGGGAAAACTTCTTTGCCCAACTTGTGATCC
CTATCAC
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