DN617658

Overview
NameDN617658
Unique NameDN617658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617658_ssr648 microsatellite DN617658_ssr648:648..659. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig97 contig Csv1_Contig97:16..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            LT + + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNY3 (Acyl carrier protein OS=Synechocystis sp. (strain PCC 6803) GN=acpP PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = -2
Query:  298 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 513
            +E+ ++V  +V    +VDP +VTPD  F +DLG DSLD VE+VMALEEEF +EIPD+ A  ID    A+E+I
Sbjct:    3 QEIFEKVKKIVVEQLEVDPDKVTPDATFAEDLGADSLDTVELVMALEEEFDIEIPDEVAETIDTVGKAVEHI 74          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_DICDI (Acyl carrier protein, mitochondrial OS=Dictyostelium discoideum GN=ndufab1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  280 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 522
            ++++E+ DRV+ VV  + KV    VTP   F K+LGLDSLD+ +I++A+EEEF +EIPD+EA +I +C   I Y+   P A
Sbjct:   40 ISEKEITDRVIGVVSQYDKVSGKTVTPTTTF-KELGLDSLDSADILVAVEEEFGIEIPDEEADKITSCAETISYLRKTPTA 119          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_TRIEI (Acyl carrier protein OS=Trichodesmium erythraeum (strain IMS101) GN=acpP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  292 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 522
            +T + V  +V+ +V    + D  +VTP+  F  DLG DSLD VE+VMALEEEF  EIPD+EA +I     A++YI N
Sbjct:    1 MTNDSVPAKVMEIVAKQLEKDQKEVTPESSFANDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQAAVDYIQN 77          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACPM_DROME (Acyl carrier protein, mitochondrial OS=Drosophila melanogaster GN=mtacp1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  328 VLDHVRVPVQTLALTGS-KQRWSVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI 630
            ++  + VP  T  L+   + RW      ++  S    L+ + + +RVL V+K + K+DPS++  + HF  DLGLDSLD+VE++MA+E+EF  EIPD +A ++
Sbjct:   35 MMHRIAVPSMTSQLSQECRGRWQTQLVRKY--SAKPPLSLKLINERVLLVLKLYDKIDPSKLNVESHFINDLGLDSLDHVEVIMAMEDEFGFEIPDSDAEKL 134          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_CYAA5 (Acyl carrier protein OS=Cyanothece sp. (strain ATCC 51142) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = -2
Query:  298 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 513
            +E+ ++V S+V    +V+   VTP+ +F  DLG DSLD VE+VMALEEEF +EIPD+ A  I     A++YI
Sbjct:    3 QEIFEKVKSIVVEQLEVEEDTVTPEANFANDLGADSLDTVELVMALEEEFDIEIPDEAAENIGTVQAAVDYI 74          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_THEEB (Acyl carrier protein OS=Thermosynechococcus elongatus (strain BP-1) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  292 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 522
            + + E++++V ++V     VDP +V P+  F +DL  DSLD+VE++MALEEEF +EIPD+EA ++      +++I N
Sbjct:    1 MNQSEILEKVKAIVADQLSVDPEKVVPEASFAEDLNADSLDSVELIMALEEEFGVEIPDEEAEKLKTVQDVLDFINN 77          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROMA (Acyl carrier protein OS=Prochlorococcus marinus GN=acpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     V+ S++ PD +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVEASEIKPDSNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGITTVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_RUBXD (Acyl carrier protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=acpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  280 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 522
            + +EE++ ++  +      VD S+VTP+  F++DL  DSLD VE++M LEE F +EIPD+EA +I     A++Y+  H  A
Sbjct:    1 MDREEILQKIQEITADRLGVDESEVTPEASFREDLEADSLDLVELIMELEEAFGMEIPDEEAEKITTVEEAVDYVVEHQTA 81          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_THET8 (Acyl carrier protein OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=acpP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +T++E+ ++V +V+    +V+P +VT +  F +DLG DSLD VE++M LE+EF LEI D+EA +I     A+EYI
Sbjct:    1 MTEQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYI 75          
The following BLAST results are available for this feature:
BLAST of DN617658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ACPM_MOUSE4.426e-1449.33Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACP_SYNY39.860e-1452.78Acyl carrier protein OS=Synechocystis sp. (strain ... [more]
ACPM_DICDI3.747e-1346.91Acyl carrier protein, mitochondrial OS=Dictyosteli... [more]
ACP_TRIEI1.424e-1248.05Acyl carrier protein OS=Trichodesmium erythraeum (... [more]
ACPM_DROME2.429e-1238.24Acyl carrier protein, mitochondrial OS=Drosophila ... [more]
ACP_CYAA54.143e-1248.61Acyl carrier protein OS=Cyanothece sp. (strain ATC... [more]
ACP_THEEB5.411e-1241.56Acyl carrier protein OS=Thermosynechococcus elonga... [more]
ACP_PROMA5.411e-1246.67Acyl carrier protein OS=Prochlorococcus marinus GN... [more]
ACP_RUBXD7.066e-1240.74Acyl carrier protein OS=Rubrobacter xylanophilus (... [more]
ACP_THET89.229e-1245.33Acyl carrier protein OS=Thermus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617658 ID=DN617658; Name=DN617658; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGCATCTCAAAGGAGGACAATGATAAAATGTCAC
CAGATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGA
CGTCATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTG
GATTATTTTCCATCTACCTTACAGAGATTATATGCAAAGCCTACAAAAAA
CAGGGTAAAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAA
GAAGAAAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGAT
GTACTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAG
GGATTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTG
TCCAAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCAC
CTGGGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGT
CAATGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGC
AGAGAACCTAACACACTCCATCGCTGTTTGGATCCGGTTAAGGCTAGGGT
TTGTACTGGTACTCGAACGTGGTCAAGCACAGCTCTTCTCAATGCCATCT
CTCTCTCTCTGCTCTTTTGGCTA
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