DN617658

Overview
NameDN617658
Unique NameDN617658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617658_ssr648 microsatellite DN617658_ssr648:648..659. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig97 contig Csv1_Contig97:16..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_THET2 (Acyl carrier protein OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=acpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +T++E+ ++V +V+    +V+P +VT +  F +DLG DSLD VE++M LE+EF LEI D+EA +I     A+EYI
Sbjct:    1 MTEQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_CYAP7 (Acyl carrier protein OS=Cyanothece sp. (strain PCC 7424) GN=acpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = -2
Query:  298 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 513
            +E+ +RV  VV    +V    V P+  F  DL  DSLD VE+VMALEEEF +EIPD+EA +ID    A+E+I
Sbjct:    3 QEIFERVKKVVIDQLEVPEDSVVPEASFANDLNADSLDTVELVMALEEEFDIEIPDEEAEKIDTVGKAVEHI 74          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNPX (Acyl carrier protein OS=Synechococcus sp. (strain WH8102) GN=acpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     VD  +V P+ +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVDAGEVKPESNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGITTVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNPW (Acyl carrier protein OS=Synechococcus sp. (strain WH7803) GN=acpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     VD  +V P+ +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVDAGEVKPESNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGITTVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_CYACA (Acyl carrier protein OS=Cyanidium caldarium GN=acpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +TKEE++ +V S+V     +   QV  D HF  DLG DSLDNVE+VMA+EEEF + I D +A +I     A+E+I
Sbjct:    2 VTKEEILKKVQSIVSEQLGISKEQVLVDSHFTNDLGADSLDNVELVMAIEEEFNIVISDIDAEKISNVREAVEFI 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROMT (Acyl carrier protein OS=Prochlorococcus marinus (strain NATL2A) GN=acpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     V+  +V PD +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVEAGEVKPDSNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROM1 (Acyl carrier protein OS=Prochlorococcus marinus (strain NATL1A) GN=acpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     V+  +V PD +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVEAGEVKPDSNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_LEUMU (Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  289 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 510
            ++  RV +VV     VD ++VT    F  DLG DSLD VE+VMALEEEF  EIPD+EA +I    LAI+Y+ +H
Sbjct:    3 DIEQRVKNVVVEQLGVDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNS9 (Acyl carrier protein OS=Synechococcus sp. (strain CC9902) GN=acpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     VD  +V P+ +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVAEQLSVDAGEVKPESNFQNDLGADSLDTVELVMALEEAFDIEIPDESAEGILTVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNR3 (Acyl carrier protein OS=Synechococcus sp. (strain RCC307) GN=acpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = -2
Query:  298 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 513
            +E++++V S+V     VD ++V P+ +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A+ YI
Sbjct:    3 QEILEKVRSIVAEQLSVDAAEVKPESNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVGDAVSYI 74          
The following BLAST results are available for this feature:
BLAST of DN617658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ACP_THET29.229e-1245.33Acyl carrier protein OS=Thermus thermophilus (stra... [more]
ACP_CYAP79.229e-1250.00Acyl carrier protein OS=Cyanothece sp. (strain PCC... [more]
ACP_SYNPX1.205e-1146.67Acyl carrier protein OS=Synechococcus sp. (strain ... [more]
ACP_SYNPW1.205e-1146.67Acyl carrier protein OS=Synechococcus sp. (strain ... [more]
ACP_CYACA1.205e-1148.00Acyl carrier protein OS=Cyanidium caldarium GN=acp... [more]
ACP_PROMT1.574e-1146.67Acyl carrier protein OS=Prochlorococcus marinus (s... [more]
ACP_PROM11.574e-1146.67Acyl carrier protein OS=Prochlorococcus marinus (s... [more]
ACP_LEUMU1.574e-1151.35Acyl carrier protein OS=Leucothrix mucor GN=acpP P... [more]
ACP_SYNS92.056e-1146.67Acyl carrier protein OS=Synechococcus sp. (strain ... [more]
ACP_SYNR32.056e-1148.61Acyl carrier protein OS=Synechococcus sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617658 ID=DN617658; Name=DN617658; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGCATCTCAAAGGAGGACAATGATAAAATGTCAC
CAGATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGA
CGTCATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTG
GATTATTTTCCATCTACCTTACAGAGATTATATGCAAAGCCTACAAAAAA
CAGGGTAAAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAA
GAAGAAAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGAT
GTACTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAG
GGATTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTG
TCCAAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCAC
CTGGGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGT
CAATGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGC
AGAGAACCTAACACACTCCATCGCTGTTTGGATCCGGTTAAGGCTAGGGT
TTGTACTGGTACTCGAACGTGGTCAAGCACAGCTCTTCTCAATGCCATCT
CTCTCTCTCTGCTCTTTTGGCTA
back to top