DN617658

Overview
NameDN617658
Unique NameDN617658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617658_ssr648 microsatellite DN617658_ssr648:648..659. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig97 contig Csv1_Contig97:16..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_GUITH (Acyl carrier protein OS=Guillardia theta GN=acpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            + ++E+ ++V +++     VD SQVT D +F  DLG DSLD VE+VMA+EE F +EIPD  A +I     A+++I
Sbjct:    1 MNEQEIFEKVQTIISEQLGVDKSQVTKDANFANDLGADSLDTVELVMAIEEAFNIEIPDDAAEQISNLQQAVDFI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_ACIF5 (Acyl carrier protein OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=acpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  289 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 513
            + V DRV  VV     V+  +VT +  F  DLG DSLD VE+VMALEEEF  EIPD+EA +I     AI+Y+  H
Sbjct:    2 DNVADRVKKVVVEQLGVNEDEVTNEASFVDDLGADSLDTVELVMALEEEFDCEIPDEEAEKIATVQQAIDYVSAH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_ACIF2 (Acyl carrier protein OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=acpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  289 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 513
            + V DRV  VV     V+  +VT +  F  DLG DSLD VE+VMALEEEF  EIPD+EA +I     AI+Y+  H
Sbjct:    2 DNVADRVKKVVVEQLGVNEDEVTNEASFVDDLGADSLDTVELVMALEEEFDCEIPDEEAEKIATVQQAIDYVSAH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_SYNJA (Acyl carrier protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=acpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  280 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 522
            ++ +EV  RV  +V     V+  +VT + +FQ DLG DSLD VE+VMA EEEF LEIPD++A  I     A+ YI +   A
Sbjct:    1 MSADEVYSRVRKIVSDQLGVEDDKVTLEANFQNDLGADSLDTVELVMAFEEEFDLEIPDEDAEGIATVQDAVNYILSKKAA 81          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROMP (Acyl carrier protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++EE++ +V S+V     V+ ++V  D +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A+++I
Sbjct:    1 MSQEEILQKVCSIVSEQLSVESAEVKSDSNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVGDAVKFI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROMM (Acyl carrier protein OS=Prochlorococcus marinus (strain MIT 9313) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++E ++++V S+V     V+  +V P+  FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A++YI
Sbjct:    1 MSQEAILEKVRSIVTEQLSVEAGEVKPESSFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGITTVGDAVKYI 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PASMU (Acyl carrier protein OS=Pasteurella multocida GN=acpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  289 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 501
            +RV  ++     V   +V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEDEVKPEASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_GEOLS (Acyl carrier protein OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -2
Query:  289 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 510
            +V  RV  ++     VD +Q   +  F  DLG DSLD VE+VMALEEEF +EIPD++A +I     AI+YI  H
Sbjct:    3 DVAKRVKEIIAEQLGVDEAQAVSEASFMDDLGADSLDTVELVMALEEEFDIEIPDEDAEKIQTVQDAIDYITEH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_CHLP8 (Acyl carrier protein OS=Chlorobaculum parvum (strain NCIB 8327) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = -2
Query:  292 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 522
            ++  E+ D+V  ++     V+  Q+TP+  F  DLG DSLD VE++M LE EF ++IPD++A +I     AI+YI N
Sbjct:    1 MSAAEIKDKVYDIIVSKMGVNKDQITPESKFADDLGADSLDTVELIMELENEFGVQIPDEDAEKIGTVQQAIDYIVN 77          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_PROM5 (Acyl carrier protein OS=Prochlorococcus marinus (strain MIT 9515) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  298 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 522
            +++EE++ +V S+V     V+  +V  D +FQ DLG DSLD VE+VMALEE F +EIPD+ A  I     A+++I
Sbjct:    1 MSQEEILQKVCSIVSEQLSVESGEVKSDSNFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVGDAVKFI 75          
The following BLAST results are available for this feature:
BLAST of DN617658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ACP_GUITH2.056e-1144.00Acyl carrier protein OS=Guillardia theta GN=acpP P... [more]
ACP_ACIF53.507e-1150.67Acyl carrier protein OS=Acidithiobacillus ferrooxi... [more]
ACP_ACIF23.507e-1150.67Acyl carrier protein OS=Acidithiobacillus ferrooxi... [more]
ACP_SYNJA4.580e-1145.68Acyl carrier protein OS=Synechococcus sp. (strain ... [more]
ACP_PROMP5.982e-1145.33Acyl carrier protein OS=Prochlorococcus marinus su... [more]
ACP_PROMM5.982e-1145.33Acyl carrier protein OS=Prochlorococcus marinus (s... [more]
ACP_PASMU5.982e-1147.89Acyl carrier protein OS=Pasteurella multocida GN=a... [more]
ACP_GEOLS5.982e-1147.30Acyl carrier protein OS=Geobacter lovleyi (strain ... [more]
ACP_CHLP85.982e-1141.56Acyl carrier protein OS=Chlorobaculum parvum (stra... [more]
ACP_PROM57.813e-1145.33Acyl carrier protein OS=Prochlorococcus marinus (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617658 ID=DN617658; Name=DN617658; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGCATCTCAAAGGAGGACAATGATAAAATGTCAC
CAGATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGA
CGTCATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTG
GATTATTTTCCATCTACCTTACAGAGATTATATGCAAAGCCTACAAAAAA
CAGGGTAAAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAA
GAAGAAAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGAT
GTACTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAG
GGATTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTG
TCCAAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCAC
CTGGGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGT
CAATGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGC
AGAGAACCTAACACACTCCATCGCTGTTTGGATCCGGTTAAGGCTAGGGT
TTGTACTGGTACTCGAACGTGGTCAAGCACAGCTCTTCTCAATGCCATCT
CTCTCTCTCTGCTCTTTTGGCTA
back to top