DN617658

Overview
NameDN617658
Unique NameDN617658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617658_ssr648 microsatellite DN617658_ssr648:648..659. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig97 contig Csv1_Contig97:16..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_MAGSM (Acyl carrier protein OS=Magnetococcus sp. (strain MC-1) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  298 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 510
            ++ +RV  +V     VD  +VT D  F +DLG DSLDNVE+VMA EEEF  EIPD+ A +I + + AI+YI
Sbjct:    3 DIAERVKKIVAEQMGVDLDKVTDDAKFVEDLGADSLDNVELVMAFEEEFGCEIPDETAEKITSVSDAIKYI 73          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_HELPJ (Acyl carrier protein OS=Helicobacter pylori J99 GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  280 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 465
            VD +QVTP+  F KDLG DSLD VE++MALEE+F +EIPD++A +I      ++YI ++ +A
Sbjct:   17 VDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFNIEIPDEQAEKIVNVGDVVKYIEDNKLA 78          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_HALHL (Acyl carrier protein OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = -2
Query:  289 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 501
            DRV  +V     V   +VT +  F  DLG DSLD VE+VMALEEEF+ EIPD+EA +I     A++YI  H
Sbjct:    6 DRVKKIVVEQLGVKEEEVTGEASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITTVQQAVDYIKKH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_GEOSL (Acyl carrier protein OS=Geobacter sulfurreducens GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  289 RVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 498
            RV  +V     VD +QVT D  F  DLG DSLD VE+VMALEEEF +EI D++A +I     AI+YI  H
Sbjct:    7 RVKEIVAEQLGVDEAQVTNDASFMDDLGADSLDTVELVMALEEEFDIEISDEDAEKIQNVQDAIDYITEH 76          
BLAST of DN617658 vs. ExPASy Swiss-Prot
Match: ACP_ANASP (Acyl carrier protein OS=Anabaena sp. (strain PCC 7120) GN=acpP PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  277 LTKEEVIDRVLSVV-KCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 522
            +++ E  ++V  +V +     +P  VTP+  F  DL  DSLD VE+VMALEEEF +EIPD+ A +I     A++YI N   AS
Sbjct:    1 MSQSETFEKVKKIVIEQLSVENPDTVTPEASFANDLQADSLDTVELVMALEEEFDIEIPDEAAEKITTVQEAVDYINNQVAAS 83          
The following BLAST results are available for this feature:
BLAST of DN617658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ACP_MAGSM7.813e-1150.70Acyl carrier protein OS=Magnetococcus sp. (strain ... [more]
ACP_HELPJ7.813e-1151.61Acyl carrier protein OS=Helicobacter pylori J99 GN... [more]
ACP_HALHL7.813e-1150.70Acyl carrier protein OS=Halorhodospira halophila (... [more]
ACP_GEOSL7.813e-1152.86Acyl carrier protein OS=Geobacter sulfurreducens G... [more]
ACP_ANASP7.813e-1143.37Acyl carrier protein OS=Anabaena sp. (strain PCC 7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617658 ID=DN617658; Name=DN617658; organism=Citrus sinensis; type=EST; length=673bp
TTTTTTTTTTTTTTTTTGCATCTCAAAGGAGGACAATGATAAAATGTCAC
CAGATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGA
CGTCATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTG
GATTATTTTCCATCTACCTTACAGAGATTATATGCAAAGCCTACAAAAAA
CAGGGTAAAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAA
GAAGAAAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGAT
GTACTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAG
GGATTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTG
TCCAAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCAC
CTGGGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGT
CAATGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGC
AGAGAACCTAACACACTCCATCGCTGTTTGGATCCGGTTAAGGCTAGGGT
TTGTACTGGTACTCGAACGTGGTCAAGCACAGCTCTTCTCAATGCCATCT
CTCTCTCTCTGCTCTTTTGGCTA
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