DN617657

Overview
NameDN617657
Unique NameDN617657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:890..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL2_MOUSE (Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = -2
Query:  389 PFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 598
            P S+LG GDI++PG+ +A   RFDV  G  S Y+ S+ + Y VG+++T +V+   +  QPALLY+VP  +
Sbjct:  408 PVSVLGFGDIIVPGLLIAYCRRFDVQTG-SSIYYISSTIAYAVGMIITFVVLMVMKTGQPALLYLVPCTL 476          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: IMP5_HUMAN (Signal peptide peptidase-like 2C OS=Homo sapiens GN=SPPL2C PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  389 ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 604
            ++PFS+LG GDIV+PG  VA   RFDV       YF +  + Y VGL++T + M   Q  QPALLY+V + +
Sbjct:  438 SQPFSILGFGDIVVPGFLVAYCCRFDVQVCSRQIYFVACTVAYAVGLLVTFMAMVLMQMGQPALLYLVSSTL 509          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: IMP5_MOUSE (Signal peptide peptidase-like 2C OS=Mus musculus GN=Sppl2c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 39/129 (30.23%), Postives = 64/129 (49.61%), Query Frame = -2
Query:  263 RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI--GFLAAHC------IWNGEVKQLLEFDESKTAAVVS--------QESSDAKTSKKVE 601
            +PFS+LG GDIV+PG  VA   RFD+       Y+ +  + Y VGL++T + M   Q  QPALLY+V + +      A C       W G+ +  +  +      + S        +++ D++T+ + E
Sbjct:  448 QPFSILGFGDIVVPGFLVAYCHRFDMQVQSRQVYYMACTVAYAVGLLVTFVAMILMQMGQPALLYLVSSTLLTSLAVATCRQEFTLFWTGQGRAKIPAEPVAQPCIASAVGSKMKLEDAKDSRTTNRFE 576          
The following BLAST results are available for this feature:
BLAST of DN617657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PSL2_MOUSE1.495e-1144.29Signal peptide peptidase-like 2A OS=Mus musculus G... [more]
IMP5_HUMAN4.351e-1145.83Signal peptide peptidase-like 2C OS=Homo sapiens G... [more]
IMP5_MOUSE5.682e-1130.23Signal peptide peptidase-like 2C OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617657 ID=DN617657; Name=DN617657; organism=Citrus sinensis; type=EST; length=653bp
TTTTTAAGTATAATAGCATTTAAAAAATTAAATTAAATAAAGAAAAAAAT
CACAAAATATATCTGAAATAGTTGTCTCACTATAGTTGTCTCACTATAAG
AGGCTAAAATATTATTTCTTGCTTAATGCCAAAATCTTTTACAATTGTTT
GCAGGTTGCATAAGTTAGCTTGGATTGAGCTTGCACAGCGTTGATCCTCA
AAAGGAGAAATAAAAGATATTTCTTTGCTAAAATGGTCCATTGTAGATGG
CATTTTAAATTATTCGACTTTCTTGCTAGTTTTGGCATCGCTACTTTCTT
GTGACACAACCGCGGCAGTCTTAGACTCATCAAACTCCAACAACTGTTTG
ACTTCGCCGTTCCATATGCAGTGAGCGGCCAAGAATCCAATTACAGCAGG
CACAATATACAAAAGTGCAGGCTGTGCAGCCTGAAACCAGTTCATGACAA
TGATTGTTAGGACTAAACCAACTGTATATCCCAGAAAAGCGCTCTTGAAG
TACCGGCTTCCTTTCCCTCTGGACACATCAAATCGCAATGCTAGTGCCAC
AAAGATACCAGGAATTACAATGTCGCCAAGTCCAAGCATGGAAAATGGTC
GGGCAGTGTCTCTCGTTGGGAACAAAAGCTTGATAGGAGCGTCAAAAGAT
TTT
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