DN617654

Overview
NameDN617654
Unique NameDN617654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617654 vs. ExPASy Swiss-Prot
Match: UD11_RAT (UDP-glucuronosyltransferase 1-1 OS=Rattus norvegicus GN=Ugt1a1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = -1 
Query:  246 AWLDKQSPKSVIYVSFGS-IAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLE-NGLKREEIEKTIRRVMVEKQGEEIRSRIFRL 749
            A+++      ++  S GS ++ + E + +EIA  L       LW  R   TR S+  +               LVKW PQ ++L HP   AF TH+G +   E IC G+PM+ MP F DQ  NA+ + +    G+ L    +  +++E  ++ V+  K  +E   R+  L
Sbjct:  294 AYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLW--RYTGTRPSNLAK------------NTILVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRM-ETRGAGVTLNVLEMTADDLENALKTVINNKSYKENIMRLSSL 448
[Close]
BLAST of DN617654 vs. ExPASy Swiss-Prot
Match: UD11_MOUSE (UDP-glucuronosyltransferase 1-1 OS=Mus musculus GN=Ugt1a1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 53/187 (28.34%), Postives = 86/187 (45.99%), Query Frame = -1 
Query:  246 CIPASPSSLXTQDQSCIAWLDKQSPKSVIYVSFGS-IAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLE-NGLKREEIEKTIRRVMVEKQGEEIRSRIFRL 800
            C+   P S     Q   A+++      ++  S GS ++ + E + +EIA  L       LW  R   TR S+  +               LVKW PQ +++ HP   AF TH+G +   E IC G+PM+ MP F DQ  NA+ + +    G+ L    +  +++E  ++ V+  K  +E   R+  L
Sbjct:  282 CLQKKPLS-----QEFEAYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLW--RYTGTRPSNLAK------------NTILVKWLPQNDLIGHPKTRAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRM-ETRGAGVTLNVLEMTADDLENALKTVINNKSYKENIMRLSSL 448
The following BLAST results are available for this feature:
BLAST of DN617654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
UD11_RAT6.682e-1129.41UDP-glucuronosyltransferase 1-1 OS=Rattus norvegic... [more]
UD11_MOUSE6.682e-1128.34UDP-glucuronosyltransferase 1-1 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617654 ID=DN617654; Name=DN617654; organism=Citrus sinensis; type=EST; length=842bp
TTTTTAACCAAGAAATGCCACCTTTGGATTCATATTCAAGCTGCATATAC
ATATAGTATATGTAATAACAAATGCTTGAAATGGTTATTAATTGTTCTGA
TAAAATTAGCTCAAAGCTTAAATGTAAGAGTTGATTACTGAGTGTGGAAA
GTAAATGTCTCTAATGATAAAATGTGAGTAACCAAGCTGTTTGTGGACTC
AAATGAAGAACGACCCTGCTTCAAGCAATGATTAGCCTTCTCCTTTAAGC
GAAAAATCCTGCTCCTAATCTCCTCTCCTTGTTTCTCCACCATTACTCTT
CTGATTGTCTTCTCTATCTCTTCTCTTTTGAGGCCATTCTCCAATTGCAG
CCCCACTTTCCAAACATCACTTACATACCTTGCGTTCACTTTTTGGTCAG
TGAAACAAGGCATACAAATCATAGGAATGCCTTCGCAAATGCTCTCCAAT
GTCGAATTCCAACCATTGTGAGTCCAAAATGCTCCAACAGCAGGGTGAGC
CAGCACCTCTTGTTGAGGTGCCCATTTCACTAAATGTCCCCTTCCATCTA
CCATTTCCATGAACCCACTTGGCAATGGCTCAAGGCAATCCGAGCCACGG
GTTAATCCAGGTCGAACCACCCACAAAAAGGGCAGCTTGCAGTTGGCTAA
CCCCCAAGCAATCTCCAAAAATTCAGCTTCACTTACTGCTGCAATACTCC
CAAAGCTCACATAGATCACTGACTTGGGTGATTGTTTGTCTAGCCAAGCA
ATGCAGCTTTGATCTTGTGTNCACAAGCTACTCGGAGAAGCTGGAATGCA
TATGTGAAATGGGCCTATTGGGAAAATAGGGATTGAAAATTG
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