DN617645

Overview
NameDN617645
Unique NameDN617645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617645_ssr301 microsatellite DN617645_ssr301:301..312. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = -1
Query:   20 FSFGVLLLETVSGKKNRGFYHSNNELN-LLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFCLGRNPIETDSS-------SSKHDETFTVNQVTVTMLNAR 418
            +SFGVL+LE +SGKKN  FY  +  +N L+ +VW+LW+   + E++D  + ++  ++EV+R +H+GLLCVQEN  +RPTM+++  +L++ + T+P P+ PGF     P    SS       SS    T +V++ T+T +N R
Sbjct:  545 YSFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKTMHELIDPFIKEDCKSDEVIRYVHIGLLCVQENPADRPTMSTIHQVLTTSSITLPVPQPPGFFFRNGPGSNPSSQGMVPGQSSSKSFTSSVDEATITQVNPR 686          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.001e-23
Identity = 47/100 (47.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  125 FSFGVLLLETVSGKKNRGFYHSNNE-LNLLGHVWRLWKEGKVLEMVDSSVD-NYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTP 418
            +SFGVL+LE +SGK+N  F+ ++    NL+ + WR W+ G  LE+VDS ++ NY +NEV RCIH+ LLCVQ + E+RP ++++++ML+S + T+P P++P
Sbjct:  507 YSFGVLVLEIISGKRNSNFHETDESGKNLVTYAWRHWRNGSPLELVDSELEKNYQSNEVFRCIHIALLCVQNDPEQRPNLSTIIMMLTSNSITLPVPQSP 606          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK24_ARATH (Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.001e-23
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  119 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGF 418
            +SFGVL+LE + GKKN     ++  + NL+ +VWRLW    +LE+VD+ + +NY  NEV+RCIH+GLLCVQEN  +RPTM++V  ML++ + T+  P+ PGF
Sbjct:  498 YSFGVLILEIIGGKKNSSINETDGSISNLVTYVWRLWNNEPLLELVDAPMGENYDRNEVIRCIHIGLLCVQENPADRPTMSTVFHMLTNTSITLHVPQPPGF 599          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.307e-23
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = -1
Query:   20 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFCLGRNPI-------ETDSSSSKHDETFTVNQVTVTMLNAR 418
            +SFGVL+LE V GKKN  F+  ++   NL+ HVWRLW     L+++D ++ ++Y  +EV+RCIH+G+LCVQE   +RP M+++  ML++ + T+P P+ PGF     P             SS     F+++  ++T    R
Sbjct:  525 YSFGVLILEIVCGKKNSSFFQMDDSGGNLVTHVWRLWNNDSPLDLIDPAIKESYDNDEVIRCIHIGILCVQETPADRPEMSTIFQMLTNSSITLPVPRPPGFFFRNRPNLDPLTYGSEQGQSSSMSVPFSIDSASITRATPR 666          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.307e-23
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = -1
Query:   20 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFCLGRNPIETDSSSSKHD--ETFTVNQVTVTMLNAR 418
            +SFGVL+LE VSG KN      +  + NL+ + WRLW  G   E+VD S  DNY  +E+ RCIH+ LLCVQE+A +RPTM+++V ML++ +  +  P+ PGF L     + + +    D  + F++++ ++T +  R
Sbjct:  530 YSFGVLVLEIVSGMKNSSLDQMDGSISNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDANDRPTMSAIVQMLTTSSIALAVPRPPGFFLRSKQEQAERACPSMDTSDLFSIDEASITSVAPR 666          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.229e-23
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = -1
Query:   23 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSVD-NYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFCLGRNPIETDSSSSKHDETFTVNQVTVTMLNA 418
            +SFGVL+LE VSG+KN  FY  +  + NL+ +VWRLW     LE+VD ++  +Y  +EV RCIH+GLLCVQEN   RP ++++  ML++ + T+  P+ PGF     P           + +    VT ++ NA
Sbjct:  535 YSFGVLILEIVSGRKNSSFYQMDGSVCNLVTYVWRLWNTDSSLELVDPAISGSYEKDEVTRCIHIGLLCVQENPVNRPALSTIFQMLTNSSITLNVPQPPGFFFRNRPESDTLRRGLEPDQYNNESVTCSIDNA 668          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK32_ARATH (Putative cysteine-rich receptor-like protein kinase 32 OS=Arabidopsis thaliana GN=CRK32 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.486e-23
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = -1
Query:   20 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSVDNYPANE-VLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFCLGRNPIETD--------SSSSKHDETFTVNQVTVTMLNAR 418
            +SFGVL+LE V GKKN  FY  ++   NL+ HVWRLW     L+++D +++    N+ V+RCIH+GLLCVQE   +RP M+++  ML++ + T+P P+ PGF   RN    D          SS     +T++  ++T +  R
Sbjct:  515 YSFGVLILEIVCGKKNSSFYKIDDSGGNLVTHVWRLWNNDSPLDLIDPAIEESCDNDKVIRCIHIGLLCVQETPVDRPEMSTIFQMLTNSSITLPVPRPPGFFF-RNRSNLDPLTYGSELGQSSSKSIPYTIDSASITRVTPR 656          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK16_ARATH (Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = -1
Query:  119 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGF 418
            +SFGVL+LE + GKK+  F+  +  + NL+ +VWRLW     LE+VD ++ ++Y  +EV+RCIH+ LLCVQEN  +RPTM++V  ML++   T+P P+ PGF
Sbjct:  521 YSFGVLILEIIVGKKSSSFHEIDGSVGNLVTYVWRLWNNESFLELVDPAMGESYDKDEVIRCIHISLLCVQENPADRPTMSTVFQMLTNTFLTLPVPQLPGF 622          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.219e-22
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = -1
Query:  119 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGF 418
            +SFGVL+ E +SG KN   Y  ++ + NL+ + WRLW  G  L++VD S  DNY  +++ RCIH+ LLCVQE+ ++RP M+++V ML++ +  +  PK PGF
Sbjct:  694 YSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSFGDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQMLTTSSIVLAVPKQPGF 795          
BLAST of DN617645 vs. ExPASy Swiss-Prot
Match: CRK14_ARATH (Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.559e-21
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = -1
Query:   20 FSFGVLLLETVSGKKNRGFYHSNNEL-NLLGHVWRLWKEGKVLEMVDSSV-DNYPANEVLRCIHVGLLCVQENAEERPTMASVVLMLSSETATMPQPKTPGFC--LGRNPIETDSSSSKHDETFTVNQVTVTMLNAR 418
            +SFGVL+LE + G+ NR  + S+  + NL+ + WRLW+    LE+VD ++ +N    EV RCIH+ LLCVQ N  +RP+++++ +ML + +  +P P+ PGF   +  N       S       T+N VT+T    R
Sbjct:  522 YSFGVLVLEIICGRNNRFIHQSDTTVENLVTYAWRLWRNDSPLELVDPTISENCETEEVTRCIHIALLCVQHNPTDRPSLSTINMMLINNSYVLPDPQQPGFFFPIISNQERDGLDSMNRSNPQTINDVTITDFEPR 658          
The following BLAST results are available for this feature:
BLAST of DN617645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CRK17_ARATH3.439e-2439.44Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
CRK33_ARATH1.001e-2347.00Putative cysteine-rich receptor-like protein kinas... [more]
CRK24_ARATH1.001e-2350.00Cysteine-rich receptor-like protein kinase 24 OS=A... [more]
CRK31_ARATH1.307e-2337.32Putative cysteine-rich receptor-like protein kinas... [more]
CRK20_ARATH1.307e-2339.42Putative cysteine-rich receptor-like protein kinas... [more]
CRK30_ARATH2.229e-2340.30Putative cysteine-rich receptor-like protein kinas... [more]
CRK32_ARATH6.486e-2339.16Putative cysteine-rich receptor-like protein kinas... [more]
CRK16_ARATH1.887e-2248.04Putative cysteine-rich receptor-like protein kinas... [more]
CRK23_ARATH3.219e-2245.10Putative cysteine-rich receptor-like protein kinas... [more]
CRK14_ARATH3.559e-2137.23Cysteine-rich receptor-like protein kinase 14 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01H23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617645 ID=DN617645; Name=DN617645; organism=Citrus sinensis; type=EST; length=418bp
ATACCTGTTTTTTTCACTACCTGGCATTTAACATTGTAACTGTGACCTGA
TTCACTGTAAATGTTTCATCATGCTTACTTGAAGATGAATCAGTTTCAAT
GGGATTTCTCCCTAGGCAAAATCCAGGGGTTTTAGGCTGGGGCATGGTTG
CAGTTTCACTACTCAACATCAAAACTACAGATGCCATAGTTGGCCTTTCT
TCAGCATTCTCTTGGACACATAAGAGGCCGACATGTATGCATCTCAGAAC
TTCATTTGCAGGATAATTATCCACTGATGAATCTACCATTTCCAACACCT
TTCCTTCCTTCCATAGTCTCCACACATGTCCAAGCAGGTTAAGTTCATTG
TTTGAGTGATAGAATCCTCTGTTCTTCTTACCACTTACTGTCTCCAATAA
TAAGACACCGAAACTAAA
back to top