DN617642

Overview
NameDN617642
Unique NameDN617642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:177..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 39/123 (31.71%), Postives = 69/123 (56.10%), Query Frame = -1 
Query:  188 DLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 556
            D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  540 DVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660
The following BLAST results are available for this feature:
BLAST of DN617642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
ERF3_SCHPO1.787e-1231.71Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617642 ID=DN617642; Name=DN617642; organism=Citrus sinensis; type=EST; length=577bp
TCAATGGATATAAAACCAAATTCACGAGAATTAAAATGAAGTCTACCGTA
AAACAAACTAAAACATGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCAGCAG
ACTTGGTGACCTTGGCACCCGATGGATCCTTCTTTTCAACACTCTTGATC
ACACCAACAGCTACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAG
GGGTGGGTAGTCGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCAGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAAACTT
GACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAGTTGGCA
GCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTT
GAGATCCTTGACAGCAACGTTCTTCAC
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