DN617642

Overview
NameDN617642
Unique NameDN617642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:177..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 93/134 (69.40%), Postives = 118/134 (88.06%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKN++VKDL+RG+VAS+SK+DPA++  NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P KPM VE F+ YPPLGRFAVRDM+QTVAVGVIK V KK+
Sbjct:  300 VKNLSVKDLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKE 433          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 96/132 (72.73%), Postives = 118/132 (89.39%), Query Frame = -1
Query:  182 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 577
            VKNV+VKD++RG VA +SK+DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  311 VKNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 97/134 (72.39%), Postives = 116/134 (86.57%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKNV+VKDLKRG+V  +SK+DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+
Sbjct:  304 VKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 97/134 (72.39%), Postives = 116/134 (86.57%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKNV+VKD++RG V S+SK+DPA+E+ NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG+V++IPTKP  VE+F+DY PLGRFAVRDMRQTVAVGVIKSV K D
Sbjct:  313 VKNVSVKDIRRGSVCSDSKNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDD 446          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 96/134 (71.64%), Postives = 118/134 (88.06%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D
Sbjct:  312 VKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.307e-52
Identity = 100/133 (75.19%), Postives = 116/133 (87.22%), Query Frame = -1
Query:  179 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 577
            VKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  312 VKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.013e-52
Identity = 96/132 (72.73%), Postives = 117/132 (88.64%), Query Frame = -1
Query:  182 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 577
            VKNV+VK+++RG VA +SK+DP   AA+FT+QVI+MNHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK  E  PKF+K+GD+ +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK
Sbjct:  311 VKNVSVKEIRRGNVAGDSKNDPPMGAASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEK 442          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.013e-52
Identity = 97/134 (72.39%), Postives = 116/134 (86.57%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKNV+VKDLKRG+V  +SK+DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+
Sbjct:  304 VKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.013e-52
Identity = 98/134 (73.13%), Postives = 120/134 (89.55%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  310 VKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 442          
BLAST of DN617642 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.935e-52
Identity = 94/134 (70.15%), Postives = 118/134 (88.06%), Query Frame = -1
Query:  176 VKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 577
            VKN+++KD++RG VAS+SK+DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  312 VKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSE 445          
The following BLAST results are available for this feature:
BLAST of DN617642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_STYLE2.307e-5269.40Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_SORMA2.307e-5272.73Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1AC_PORPU2.307e-5272.39Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A3_OSCTI2.307e-5272.39Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI2.307e-5271.64Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A1_HORSE2.307e-5275.19Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_TRIRE3.013e-5272.73Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_PORYE3.013e-5272.39Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A3_RHIRA3.013e-5273.13Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_ONCVO3.935e-5270.15Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617642 ID=DN617642; Name=DN617642; organism=Citrus sinensis; type=EST; length=577bp
TCAATGGATATAAAACCAAATTCACGAGAATTAAAATGAAGTCTACCGTA
AAACAAACTAAAACATGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCAGCAG
ACTTGGTGACCTTGGCACCCGATGGATCCTTCTTTTCAACACTCTTGATC
ACACCAACAGCTACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAG
GGGTGGGTAGTCGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCAGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAAACTT
GACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAGTTGGCA
GCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTT
GAGATCCTTGACAGCAACGTTCTTCAC
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