DN617641

Overview
NameDN617641
Unique NameDN617641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  389 PPIIFATQEDFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLI---------EG--TDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLKVAYKLP 676
            P IIF  ++D  D + G V+          GL  SVI+S   F + KD+  +         EG  T CS+CL E+ E+E LR++P+C H FH+ C+D WLK+    P
Sbjct:   79 PRIIFVAEDD--DLESGNVV--------VGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCP 175          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  479 GLPQSVIDSIAVFKYKKDVGLI---EGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            GL + VI+S   F Y +  GL     G +C++CLSEF++ E+LR +P CSH FH +CID WL
Sbjct:   94 GLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWL 155          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  482 LPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLKVAYKLP 676
            L  +V++ I +F Y          +CSVCLSEF+ED+  R+LPKC H FH+ CIDTW +     P
Sbjct:   88 LDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCP 152          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.473e-11
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  479 GLPQSVIDSIAVFKYKKDVGLI---EGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLK 658
            GL  SVI++   F Y     L    E  +C VCL+EF++DE+LRL+P+C H FH  CID WL+
Sbjct:   89 GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLR 151          

HSP 2 Score: 21.1718 bits (43), Expect = 6.473e-11
Identity = 7/9 (77.78%), Postives = 7/9 (77.78%), Query Frame = 3
Query:  657 RSHTNCPLC 683
            RS T CPLC
Sbjct:  151 RSQTTCPLC 159          
The following BLAST results are available for this feature:
BLAST of DN617641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ATL3K_ARATH2.112e-1137.38RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL4C_ARATH6.144e-1148.39Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL3L_ARATH6.144e-1144.62RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL1C_ARATH6.473e-1147.62RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617641 ID=DN617641; Name=DN617641; organism=Citrus sinensis; type=EST; length=684bp
ATTTCTCCCTTCTGCTTGATCATTATCAGATTCTTCCTCCTCTGCTTTTG
TGATGGGGTTTAAATTTGATCATAGAAAACCGCTACTAAAATTCGATTAC
AATAATAGCTCAACCCCGCTTAGTCCAGGAAAAAATGATTCTAGTTCTGG
TTTGTCTTCATCATCATGCTTGATTGGCTGCCGAAAGTGTAAGTGCCAAG
GCGATTTCGATTTTCCTCCTCCCTTGCCTCTAGCACCGCCGGCTGGTGAT
GGATCACATGCAAAGCAATTAGTTACTACGGGTATGATTGTCATGTCTTG
CATCATTGCTGGTACGCTTCTTTTTGGCATTTTGTGTGCAGCTGTAAGAG
TTTATCGTTCAAGGAGAAATAATTCAAGAAGAACTAATCCGCCAATAATT
TTTGCTACGCAAGAGGATTTTTTTGATGAAGATCATGGACCTGTTTTGGA
TCATCCCATATGGTACATCAATACTATTGGTCTTCCACAATCTGTGATTG
ATTCTATTGCAGTGTTTAAGTACAAAAAAGATGTGGGTTTGATTGAAGGA
ACAGATTGCTCTGTTTGCTTGAGTGAGTTTCAGGAAGATGAGAGCCTTAG
GCTATTGCCCAAGTGTAGCCATGCCTTTCACATTTCTTGTATTGACACTT
GGTTAAAGGTCGCATACAAATTGCCCTTTGTGTC
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