DN617635

Overview
NameDN617635
Unique NameDN617635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 59/116 (50.86%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KV+FD+ +G +  GR+V+ LF    P+T +NF AL TGEKG G       YK S FHRVI  FM Q            +SIYG +F DENF  KH GPG +SMANAG  TNGS FF
Sbjct:   45 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 153          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 60/116 (51.72%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KVFFD+ V  QP GRI++ LF    P+T ENF+ L  G     K G+   YKGS+FHRVI  FM Q             SIYG +F DENF  KH G G LSMANAGP TNG+ FF
Sbjct:   33 KVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLSIGT--TLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFF 146          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.042e-25
Identity = 59/116 (50.86%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KVFFD+ V G+P  RI++ LF    P+T ENF+ L  G +   K G+   YKGS+FHRVI  FM Q             SIYG +F DENF  +H G G LSMANAGP TNGS FF
Sbjct:   33 KVFFDIEVDGKPLARIIIGLFGKTVPKTVENFKQLSIGTQL--KDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFF 146          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.042e-25
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            +VF DM +  +P GRI ++LF    P+T ENFRALCTGE G+  + K  LHYKG+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSMAN GP +N S FF
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFF 123          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.279e-25
Identity = 62/116 (53.45%), Postives = 67/116 (57.76%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KV+FDM +GG+P GRIV+ LF    P+TA NF  L    KG G       Y GS FHRVI  FM Q             SIYG KFADENF  KH G G LSMANAG  TNGS FF
Sbjct:   30 KVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 138          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.894e-25
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 2
Query:   47 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            P VF D+ + G+  GRI + LF+ + P+TAENFR  CTGE  +G + KP+ YK S+FHR+I GFM Q             +I+ S+ F DENF  KH  PG+LSMANAG  +NG  FF
Sbjct:    5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFF 121          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.004e-25
Identity = 62/116 (53.45%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            K FFD+  G +  GRI+ ELF DV P T  NFR LCT +   G       YKGS FHR+IPGFMCQ            +SIYG+KF DENF  KH     LSMANAGP TNGS FF
Sbjct:    4 KAFFDIKAGDERLGRIIFELFNDV-PDTTRNFRELCTHKNNFG-------YKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFS-LSMANAGPNTNGSQFF 110          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.004e-25
Identity = 59/116 (50.86%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KVFFDM +GG+P G+IV+ LF +V P+T +NF  L    +G G       Y GS FHRVI  FM Q             SIYG +F DENF  +H GPG LSMANAG  TNGS FF
Sbjct:   27 KVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFF 135          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.300e-23
Identity = 57/114 (50.00%), Postives = 69/114 (60.53%), Query Frame = 2
Query:   56 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            +F +++ G+    I  ELF +V P+T +NF +LC G +   K G+ L YKGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSMANAGP TNGS FF
Sbjct:    6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFE---KDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFF 116          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.453e-23
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 2
Query:   53 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            VF D+ +   P GR++ EL+ DV P+T +NF+ LCTG+ G  + G  LHYK S FHR++     Q            ESIYG  F DENF   H   G+L MAN G  +NGS F+
Sbjct:  144 VFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFY 258          
The following BLAST results are available for this feature:
BLAST of DN617635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PPIB_BOVIN1.814e-2550.86Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_SCHJA3.095e-2551.72Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_SCHMA4.042e-2550.86Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CYP9_CAEBR4.042e-2549.57Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP5_CAEEL5.279e-2553.45Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIH_SCHPO6.894e-2548.31Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPIA_SCHMA9.004e-2553.45Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
CYP6_CAEEL9.004e-2550.86Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPID_SCHPO1.300e-2350.0040 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPIL6_HUMAN6.453e-2343.48Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617635 ID=DN617635; Name=DN617635; organism=Citrus sinensis; type=EST; length=398bp
TTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATGCCAAACCCCA
AAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCGGCCGGCAGGATCGTG
ATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGC
CCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACT
ACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGG
GGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTC
GAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCC
TCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCATTTCTTCG
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