DN617635

Overview
NameDN617635
Unique NameDN617635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 55/117 (47.01%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            +VF D++V     GRI + LF +  P+T ENFRALCTGE G+  + K  LHYK + FHR++  FM Q             SIYG  F DE F  KH+ P +LSMAN GP +N S FF
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFF 122          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 2
Query:   53 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            VF D+++   P GR++ EL++D  P+T +NF+ LCTG+ G  +SG  LHY GS FHRV+     Q            ESIYG  F DENF   H   G+L M N G  +NGS F+
Sbjct:  140 VFLDISIDLYPIGRLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFY 254          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.040e-21
Identity = 56/116 (48.28%), Postives = 67/116 (57.76%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            K F D+ + G+ AGRIV+EL  DV P+T +NF         +G   K   YKGS+FHRVI  FM Q             SIYG +F DENF  KH   G++SMANAGP TNGS FF
Sbjct:   24 KAFMDIEIDGESAGRIVLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKH-DRGVISMANAGPNTNGSQFF 126          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.113e-20
Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KVFFD+  G +  GRIV+ L+  V P+TA+NF  L T      K G    + GS+FHRVIP FM Q            +SIYG  F DENF  KH   G LSMAN G  TNGS FF
Sbjct:   37 KVFFDIEHGEEKVGRIVIGLYGKVCPKTAKNFYKLSTTTNS--KKG----FIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFF 146          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.314e-19
Identity = 54/116 (46.55%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            KV+FD+  G +  GRIVM L+   TP+T ENF  L      + +  K + Y  S FHRVIP FM Q            +SI+G+ F DENF  KH  PG LSMAN G  TNGS FF
Sbjct:   35 KVYFDINHGDKQIGRIVMGLYGLTTPQTVENFYQLT-----ISRDPK-MGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFF 144          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIL6_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus musculus GN=Ppil6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.392e-17
Identity = 43/102 (42.16%), Postives = 53/102 (51.96%), Query Frame = 2
Query:   53 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSM 358
            V+ D+ +   P GR++ EL+ D  PRT  NF+ LCTG  G  + G  LHYK S FHRV+     Q            ESIYG  F DENF   H   G+L M
Sbjct:  146 VYLDICIDLSPIGRLIFELYCDACPRTCTNFQVLCTGTSGFSERGTKLHYKDSIFHRVVQNGWIQGGDIVQGRGDDGESIYGPTFEDENFSIPHNKRGVLGM 247          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 46/116 (39.66%), Postives = 58/116 (50.00%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFF 397
            K++ D+    +P GRIV  LF    P+T  NFR +C   +G+  +     Y GS FHRVI  F+ Q             SIYG  F DE    +H  PG L MAN GP TNG  F+
Sbjct:   27 KIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFY 136          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 50/104 (48.08%), Postives = 57/104 (54.81%), Query Frame = 2
Query:   89 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSHFF 397
            G I +EL+ D  PRT +NF  L           K  +Y G SFHR+I  FM Q             SIYG +FADE N   +HTG GILSMANAGP TNGS FF
Sbjct:   14 GSIHIELYWDHAPRTCKNFYELA----------KRGYYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFF 106          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 43/118 (36.44%), Postives = 59/118 (50.00%), Query Frame = 2
Query:   50 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADEN--FVKKHTGPGILSMANAGPGTNGSHFF 397
            +++ D+    +P GRI   LF  + P+T  NFR +C   +G+  +     Y GS FHRV+  F+ Q             SIYG  F DE+     +H  PG L MAN GP TNG  F+
Sbjct:   28 RIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICL--RGINGTS----YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFY 139          
BLAST of DN617635 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 48/109 (44.04%), Postives = 58/109 (53.21%), Query Frame = 2
Query:   89 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXX-----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSHFF 397
            G I +E+F +  P+TAENF ALC        SG   +Y  ++FHR IPGFM Q                  SI+G KF DE     KH   GI+SMAN+GP TNGS FF
Sbjct:   10 GDIKIEVFCEAVPKTAENFLALCA-------SG---YYDNNTFHRNIPGFMIQVHEHLHTGDPTGTGKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFF 108          
The following BLAST results are available for this feature:
BLAST of DN617635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
CYP9_CAEEL1.438e-2247.01Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL6_BOVIN2.452e-2243.48Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIA_NEOCA6.040e-2148.28Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYPB_YEAST5.113e-2048.28Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
CYPD_YEAST3.314e-1946.55Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPIL6_MOUSE1.392e-1742.16Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus ... [more]
CYPR_CALVI3.792e-1539.66Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR1.882e-1448.08Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
CYPR_DROME2.458e-1436.44Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL3_RHIOR4.192e-1444.04Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617635 ID=DN617635; Name=DN617635; organism=Citrus sinensis; type=EST; length=398bp
TTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATGCCAAACCCCA
AAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCGGCCGGCAGGATCGTG
ATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGC
CCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACT
ACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGG
GGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTC
GAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCC
TCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCATTTCTTCG
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