DN617634

Overview
NameDN617634
Unique NameDN617634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  369 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 524
            G  TIIGGGDSVAAVEKVG+ADKMSHISTGGGASLELLEGK LPG++ALDDA
Sbjct:  347 GTVTIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKELPGIVALDDA 398          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = -3
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            LS KG  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDD
Sbjct:  346 LSAKGCCTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKVLPGVAALDD 400          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            L+  G TTIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  347 LTATGTTTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  369 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 524
            G TTIIGGGDSVAAVEKVGLAD+MSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  349 GTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  369 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 524
            G TTIIGGGDSVAAVEKVGLAD+MSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  349 GTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDEA 400          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            +S KG TTIIGGGDSVAAVEKVG+A+ MSHISTGGGASLELLEGK LPGVLAL++A
Sbjct:  373 ISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.403e-19
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            LS +G  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  346 LSAQGCCTIIGGGDSVAAVEKAGLAKKMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALDD
Sbjct:  346 LTASGTVTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDD 400          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            L+  G TTIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  357 LTQAGATTIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKVLPGIAALTEA 412          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_SYNR3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.445e-18
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            LS KG  TIIGGGDSVAAVEK GLA +MSHISTGGGASLELLEGK LPGV ALD+A
Sbjct:  346 LSAKGCCTIIGGGDSVAAVEKAGLAAQMSHISTGGGASLELLEGKVLPGVAALDEA 401          
The following BLAST results are available for this feature:
BLAST of DN617634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
PGK_SYNP24.927e-1988.46Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMA4.927e-1987.27Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_MICAN4.927e-1982.14Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_ANAVT6.434e-1988.46Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_ANASP6.434e-1988.46Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]
PGKH_SPIOL6.434e-1983.93Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGK_PROMT8.403e-1985.71Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNY31.433e-1881.82Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_SYNJB1.872e-1882.14Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_SYNR32.445e-1883.93Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617634 ID=DN617634; Name=DN617634; organism=Citrus sinensis; type=EST; length=538bp
AGTTTAATAGCATTCGTGAAGAATATTGCCTGAAAACATCATTCAAGAAA
CAATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTAACAATCATCA
ACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCAGGAAACTTA
TAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGC
ATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCT
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