DN617634

Overview
NameDN617634
Unique NameDN617634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.193e-18
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            LS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  346 LSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = -3
Query:  369 VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 521
            V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  352 VCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = -3
Query:  369 VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 521
            V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  352 VCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = -3
Query:  369 VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 521
            V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  352 VCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = -3
Query:  369 VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 521
            V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL DA
Sbjct:  352 VCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALKDA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  369 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 524
            G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  350 GADTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = -3
Query:  369 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 536
            L+  G  TIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  357 LTQAGAITIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKELPGIAALSEA 412          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.585e-17
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  407 LTPKGAITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 461          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.070e-17
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -3
Query:  369 VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 521
            V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  352 VCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKILPGVAALNDA 402          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.070e-17
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  406 LTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
The following BLAST results are available for this feature:
BLAST of DN617634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
PGK_PROM13.193e-1883.93Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMS4.171e-1890.20Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM94.171e-1890.20Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM24.171e-1890.20Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMP7.114e-1890.20Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM17.114e-1884.62Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_SYNJA9.291e-1880.36Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGKH_VOLCA1.585e-1780.00Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_PROM02.070e-1788.24Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKH_CHLRE2.070e-1780.00Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617634 ID=DN617634; Name=DN617634; organism=Citrus sinensis; type=EST; length=538bp
AGTTTAATAGCATTCGTGAAGAATATTGCCTGAAAACATCATTCAAGAAA
CAATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTAACAATCATCA
ACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCAGGAAACTTA
TAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGC
ATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCT
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