DN617634

Overview
NameDN617634
Unique NameDN617634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK1_MACEU (Phosphoglycerate kinase 1 OS=Macropus eugenii GN=PGK1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = -3
Query:  372 KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 527
            +G  TIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV  L++
Sbjct:  365 RGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVSTLNN 416          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_XYLFT (Phosphoglycerate kinase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -3
Query:  378 TIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 515
            +I GGGD++AA++K G+AD++S+ISTGGGA LE LEGKTLP V AL
Sbjct:  341 SIAGGGDTLAAIDKYGVADQISYISTGGGAFLEFLEGKTLPAVAAL 386          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_XYLFA (Phosphoglycerate kinase OS=Xylella fastidiosa GN=pgk PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -3
Query:  378 TIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 515
            +I GGGD++AA++K G+AD++S+ISTGGGA LE LEGKTLP V AL
Sbjct:  341 SIAGGGDTLAAIDKYGVADQISYISTGGGAFLEFLEGKTLPAVAAL 386          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_FRASN (Phosphoglycerate kinase OS=Frankia sp. (strain EAN1pec) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = -3
Query:  375 GVTTIIGGGDSVAAVEKVGLA-DKMSHISTGGGASLELLEGKTLPGVLALD 524
            G  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  349 GGFSVVGGGDSAAAVRILGIPEDDFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CORU7 (Phosphoglycerate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = -3
Query:  378 GVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLAL 524
            G  +++GGGDS AAV  +GL +K  SHISTGGGASLE LEGKTLPGV  L
Sbjct:  352 GAFSVVGGGDSAAAVRTLGLDEKGFSHISTGGGASLEFLEGKTLPGVEVL 401          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CORDI (Phosphoglycerate kinase OS=Corynebacterium diphtheriae GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  375 SGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 533
            +  G  +++GGGDS AAV  +GL  D  SHISTGGGASLELLEGK LPGV  L+
Sbjct:  351 TANGAFSVVGGGDSAAAVRLLGLDEDGFSHISTGGGASLELLEGKNLPGVSVLE 404          
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_AKKM8 (Phosphoglycerate kinase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=pgk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+     +I+GGGDSV A +K  + DK+S  STGGGASLELLEGK LPGV AL D
Sbjct:  343 LADSTAISIVGGGDSVTAAKKFKVQDKLSFCSTGGGASLELLEGKVLPGVGALTD 397          
The following BLAST results are available for this feature:
BLAST of DN617634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
PGK1_MACEU6.449e-1161.54Phosphoglycerate kinase 1 OS=Macropus eugenii GN=P... [more]
PGK_XYLFT8.423e-1167.39Phosphoglycerate kinase OS=Xylella fastidiosa (str... [more]
PGK_XYLFA8.423e-1167.39Phosphoglycerate kinase OS=Xylella fastidiosa GN=p... [more]
PGK_FRASN8.423e-1166.67Phosphoglycerate kinase OS=Frankia sp. (strain EAN... [more]
PGK_CORU78.423e-1168.00Phosphoglycerate kinase OS=Corynebacterium urealyt... [more]
PGK_CORDI8.423e-1162.96Phosphoglycerate kinase OS=Corynebacterium diphthe... [more]
PGK_AKKM88.423e-1161.82Phosphoglycerate kinase OS=Akkermansia muciniphila... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617634 ID=DN617634; Name=DN617634; organism=Citrus sinensis; type=EST; length=538bp
AGTTTAATAGCATTCGTGAAGAATATTGCCTGAAAACATCATTCAAGAAA
CAATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTAACAATCATCA
ACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCAGGAAACTTA
TAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGC
ATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCT
back to top