DN617634

Overview
NameDN617634
Unique NameDN617634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_THESQ (Phosphoglycerate kinase OS=Thermotoga sp. (strain RQ2) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = -3 
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  342 LTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = -3 
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+ KGVTT++GGGDS AAV + GL  K SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  342 LTDKGVTTVVGGGDSAAAVSQFGLEKKFSHVSTGGGASLEFLEGKELPGIASIAD 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_DESDA (Phosphoglycerate kinase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = -3 
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            LS      ++GGGDSVAAVEK GLAD+M +ISTGGGASLELLEGK LP V AL+D
Sbjct:  333 LSDSKAFVVVGGGDSVAAVEKYGLADRMGYISTGGGASLELLEGKKLPSVAALED 387
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = -3 
Query:  372 TTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 518
            TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  352 TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CLOPS (Phosphoglycerate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  372 TTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 518
            TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  348 TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CLOPE (Phosphoglycerate kinase OS=Clostridium perfringens GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  372 TTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 518
            TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  348 TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_CLOP1 (Phosphoglycerate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  372 TTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 518
            TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  348 TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -3 
Query:  372 TIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 515
            ++IGGGDS AAVE+ GLADKMSHISTGGGASLE +EGK LPGV+AL +
Sbjct:  346 SVIGGGDSAAAVEQFGLADKMSHISTGGGASLEFMEGKELPGVVALSE 393
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = -3 
Query:  372 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 536
            L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  342 LTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396
[Close]
BLAST of DN617634 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = -3 
Query:  372 TIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 515
            TI+GGGDSVAAVEK+G+A K+ HISTGGGASLE LEGK LPGV+AL +
Sbjct:  345 TIVGGGDSVAAVEKMGVAGKIGHISTGGGASLEFLEGKALPGVVALTE 392
The following BLAST results are available for this feature:
BLAST of DN617634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
PGK_THESQ2.142e-1465.45Phosphoglycerate kinase OS=Thermotoga sp. (strain ... [more]
PGK_FERNB2.142e-1465.45Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_DESDA2.142e-1470.91Phosphoglycerate kinase OS=Desulfovibrio desulfuri... [more]
PGK_CLOTE2.142e-1475.51Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_CLOPS2.142e-1477.55Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOPE2.142e-1477.55Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOP12.142e-1477.55Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_BACSK2.142e-1477.08Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGKT_THEMA2.142e-1465.45Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
PGK_MOOTA3.654e-1477.08Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01H17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617634 ID=DN617634; Name=DN617634; organism=Citrus sinensis; type=EST; length=538bp
AGTTTAATAGCATTCGTGAAGAATATTGCCTGAAAACATCATTCAAGAAA
CAATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTAACAATCATCA
ACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCAGGAAACTTA
TAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGC
ATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCT
back to top