DN617631

Overview
NameDN617631
Unique NameDN617631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:110..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = -1
Query:  267 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 404
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  287 GDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  267 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 410
            F GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  282 FTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = -1
Query:  267 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 404
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = -1
Query:  267 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 404
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  267 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 410
            F+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  284 FLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.731e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  276 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 410
            FVG+  SSIFDAKAGIAL K FVKLVSWYDNEWGYS RVVDL++H
Sbjct:  290 FVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.731e-15
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  267 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 407
            +GD+ SSIFDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  288 IGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = -1
Query:  261 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 410
            F GDSRSSIFDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.857e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  267 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 404
            GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  287 GDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of DN617631 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.579e-15
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = -1
Query:  267 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 410
            F+GD+ SSIFDA AGIAL+  FVKLVSWYDNE GYSTRV+DL+V++SK
Sbjct:  286 FIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
The following BLAST results are available for this feature:
BLAST of DN617631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_PHANO1.326e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_PANVR1.326e-1579.17Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_CURLU1.326e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COCHE1.326e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P2_YEAST1.326e-1579.17Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_MASBA1.731e-1582.22Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_ASPOR1.731e-1576.60Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_TRISI2.953e-1576.00Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_ASPNG3.857e-1580.43Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_DICDI6.579e-1575.00Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01H15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617631 ID=DN617631; Name=DN617631; organism=Citrus sinensis; type=EST; length=410bp
ATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACATAA
GTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCACAA
CCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTTAT
TTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCACAAA
GAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACGCC
GAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCACACGA
GTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTT
CTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTACTGT
CACCAACAAA
back to top