DN617620

Overview
NameDN617620
Unique NameDN617620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:266..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 80/120 (66.67%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.265e-37
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = -1
Query:  251 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T++  E
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.265e-37
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.764e-36
Identity = 69/120 (57.50%), Postives = 94/120 (78.33%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A I+T  S + N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VR++++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE++ +
Sbjct:   66 ACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.715e-36
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = -1
Query:  260 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 622
            AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK+TI+
Sbjct:   66 AAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 77/123 (62.60%), Postives = 95/123 (77.24%), Query Frame = -1
Query:  260 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 622
            AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I+
Sbjct:   66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.043e-36
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I
Sbjct:   66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.792e-35
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = -1
Query:  263 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 625
            +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   65 NACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  263 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 625
            +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   65 NACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NFLGEK  R   ++ GVTV    KV KD+++++G DIE V ++AA I Q   VK+KD R F+DGIY+ EK
Sbjct:   71 ALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL9_BOVIN1.914e-3766.6760S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_ICTPU3.265e-3765.3260S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_PONAB4.265e-3766.6760S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_DICDI2.764e-3657.5060S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL4.715e-3661.1660S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST6.158e-3662.6060S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST8.043e-3663.1160S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO1.792e-3560.3360S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO8.892e-3559.5060S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU7.808e-2348.3150S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bp
TTTTGATTAGAAGATTAGTTCAAGAGGTAGATAAAAGATCAAAAATGCCA
GATGCATAGCTATAAAATCCATACATATATTGTGATGATAGCAATTGAAG
ACATAAAATTGAAATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACC
AAAAGCATGTCCTCAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAA
AAAAAATTCATAACATTACTATGACAAGAAAATTCGAAAGCTAATCATCA
TTCTTCTCCAAGTATGGTGCTTTTCTCACTGACATAGATCCCATCAAGAA
ATTTCCTAATGTCCTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCA
GCAGAGCGAGACACGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATC
CTTAACCTTATCGGACCTAATGACGGTAACACCATCAAGCATATCCACTT
TTCGAACCTTTTTCTCTCCAAGAAAGTTACGGATCTCAATGGCCTTGTTA
TTGTTACCGATGGAGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCAT
CTTGTAGCGATAGCCCTTGGTAACACCAGTGATGAGATTGCCGACATGGC
TGAGGGCAGTTCTGATGGCGGCGCTGGT
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