DN617620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21 Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -1 Query: 260 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 622 A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK R + V V S ++++++G DIE V +AA I + V ++D R F+DGIY+ EK L Sbjct: 67 ALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20 Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = -1 Query: 281 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 622 A + T +H+ N+ITGVTKG+RYKM+ V++HFPI+ + + +EI NF+GEK R +L GVTV KV+ +++++G DIE V+++AA I Q + D R F+DGIY+ Sbjct: 71 ALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19 Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 281 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 622 A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK D + I + VK ++++++G DIE V ++AA I VK+KD R F DGIY+ Sbjct: 67 ALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19 Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19 Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19 Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19 Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NFLGEK R+ +++GVTV S +++++ G D E V ++AA I Q +K +D R F DGIY+ EK+ Sbjct: 66 AMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19 Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -1 Query: 269 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 628 T A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R +++ V ++ DKV VL G + E + ++AA I Q C ++ +D R F DGIY++ K+ Sbjct: 62 TKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19 Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NFLGEK RK +++GV V S +++++ G D E ++AA I Q V+ +D R F DGIY+ EK+ Sbjct: 66 AAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19 Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = -1 Query: 251 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 622 A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N +GEK +R+ ++ GV V VK ++++++G DIE V ++AA I + D R F DGIY+ +K I E+ Sbjct: 66 AQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184 The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bpback to top |