DN617620

Overview
NameDN617620
Unique NameDN617620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E   ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625
            +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   65 TAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NFLGEK  RK  +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   66 AIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   66 AIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625
            +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   65 TAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/118 (41.53%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV     +  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   66 AIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   66 AIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:   67 ALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A   + +SH+ N+ITGVTKGYRY ++ +Y HFP +  +  N   ++I N +GEK  R+  +L+GV V       +++V++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:   66 AVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T  +H+ N+I GVT G+ Y+MR VY+HFPI   + +   AI   NFLGE+K R   ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY+ EK
Sbjct:   64 AMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175          
The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL6_PYRHO6.840e-1943.7050S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METMP6.840e-1944.5450S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_PYRFU8.934e-1944.5450S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_PYRKO1.167e-1842.8650S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_METM61.990e-1843.7050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_THEON4.434e-1841.5350S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_THEGJ4.434e-1842.8650S ribosomal protein L6P OS=Thermococcus gammatol... [more]
RL6_AERPE5.791e-1842.1550S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_SULSO1.685e-1736.6750S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_METTP1.685e-1741.8850S ribosomal protein L6P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bp
TTTTGATTAGAAGATTAGTTCAAGAGGTAGATAAAAGATCAAAAATGCCA
GATGCATAGCTATAAAATCCATACATATATTGTGATGATAGCAATTGAAG
ACATAAAATTGAAATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACC
AAAAGCATGTCCTCAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAA
AAAAAATTCATAACATTACTATGACAAGAAAATTCGAAAGCTAATCATCA
TTCTTCTCCAAGTATGGTGCTTTTCTCACTGACATAGATCCCATCAAGAA
ATTTCCTAATGTCCTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCA
GCAGAGCGAGACACGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATC
CTTAACCTTATCGGACCTAATGACGGTAACACCATCAAGCATATCCACTT
TTCGAACCTTTTTCTCTCCAAGAAAGTTACGGATCTCAATGGCCTTGTTA
TTGTTACCGATGGAGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCAT
CTTGTAGCGATAGCCCTTGGTAACACCAGTGATGAGATTGCCGACATGGC
TGAGGGCAGTTCTGATGGCGGCGCTGGT
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