DN617620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19 Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19 Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19 Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK RK +L GVTV KV+ E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18 Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NFLGEK R+ +L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18 Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18 Identity = 49/118 (41.53%), Postives = 72/118 (61.02%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R+ +L GVTV + E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18 Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R+ +L GVTV KV+ E+ ++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 66 AIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18 Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = -1 Query: 263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622 A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFLGEK +R ++ GV V +VK +++++G D+E V+++AA I VK+KD RKF+DGIY+ E+ I Sbjct: 67 ALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17 Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = -1 Query: 263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622 A + +SH+ N+ITGVTKGYRY ++ +Y HFP + + N ++I N +GEK R+ +L+GV V +++V++G ++E V+++AA I + D R F DGI++ +K I Sbjct: 66 AVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17 Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NFLGE+K R ++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK Sbjct: 64 AMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175 The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bpback to top |