DN617620

Overview
NameDN617620
Unique NameDN617620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = -1
Query:  269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625
            ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+  +S
Sbjct:   61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = -1
Query:  269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625
            +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   65 TAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = -1
Query:  269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625
            +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   65 TAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628
            T + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:   59 TMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTT-IHGDTDVEIDG--EELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1
Query:  440 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 622
            AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNFLGEK VR V +
Sbjct:   66 AAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +  N K   I NFLGEKK R  ++L   +V  S    DE+++ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:   64 AMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628
            T + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:   59 TDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +  +   IE  NFLGE+  R    +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY+  K
Sbjct:   65 AMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = -1
Query:  275 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 628
            T + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:   58 TRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R   +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:   64 AMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL6_METHJ1.685e-1742.5050S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METVS2.200e-1741.6750S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA2.200e-1741.6750S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_HALMA3.177e-1639.5050S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL9_HAECO4.150e-1663.9360S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_METBU4.150e-1641.0350S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_HALSA7.078e-1637.8250S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_METTH9.245e-1640.6850S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_NATPD2.060e-1541.5350S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_METMA2.690e-1542.3750S ribosomal protein L6P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bp
TTTTGATTAGAAGATTAGTTCAAGAGGTAGATAAAAGATCAAAAATGCCA
GATGCATAGCTATAAAATCCATACATATATTGTGATGATAGCAATTGAAG
ACATAAAATTGAAATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACC
AAAAGCATGTCCTCAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAA
AAAAAATTCATAACATTACTATGACAAGAAAATTCGAAAGCTAATCATCA
TTCTTCTCCAAGTATGGTGCTTTTCTCACTGACATAGATCCCATCAAGAA
ATTTCCTAATGTCCTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCA
GCAGAGCGAGACACGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATC
CTTAACCTTATCGGACCTAATGACGGTAACACCATCAAGCATATCCACTT
TTCGAACCTTTTTCTCTCCAAGAAAGTTACGGATCTCAATGGCCTTGTTA
TTGTTACCGATGGAGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCAT
CTTGTAGCGATAGCCCTTGGTAACACCAGTGATGAGATTGCCGACATGGC
TGAGGGCAGTTCTGATGGCGGCGCTGGT
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