DN617620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17 Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK R +L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ +S Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = -1 Query: 269 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 625 +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 65 TAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16 Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1 Query: 272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628 T + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + IE NFLGEK R+ + G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y++ K Sbjct: 59 TMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTT-IHGDTDVEIDG--EELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16 Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1 Query: 440 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 622 AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNFLGEK VR V + Sbjct: 66 AAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16 Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A + T SH+ N++ GV G+ Y M+ VY+HFP+ + N K I NFLGEKK R ++L +V S DE+++ G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 64 AMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -1 Query: 272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628 T + + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+ + V+ D +E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK Sbjct: 59 TDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16 Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+ R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY+ K Sbjct: 65 AMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15 Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = -1 Query: 275 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 628 T + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NFLGEK RK + G T + D +EL + G IE V ++AA I Q V +KD R F DG+Y++E Sbjct: 58 TRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15 Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK R +L G T ++ +E+V+ G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 64 AMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176 The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bpback to top |