DN617620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15 Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = -1 Query: 272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628 TSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK R+ T IR D ++ E+V L G E V ++AA I Q V +KD R F DG+Y+++K Sbjct: 63 TSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15 Identity = 40/120 (33.33%), Postives = 71/120 (59.17%), Query Frame = -1 Query: 263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622 A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N +GEK +R+ +L GV V +++V++G+DI V+++AA I + D R F DGIY+ +K I Sbjct: 69 ALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A + T H+ NLITGV +G+ Y ++ VYAHFPI + N IE NF+GEK R+ ++ V S + ++ + G DIE ++AA + Q +K KD R F DGIY+ +K Sbjct: 84 AMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14 Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+ R ++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K Sbjct: 66 AMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ RK ++ D V V VK +++ + G + E V ++ A I Q +K +D R F DGIY+ +K Sbjct: 66 AMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14 Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = -1 Query: 269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622 A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NFLGEKK R +I KVK +++ + G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 64 AMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14 Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = -1 Query: 272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622 A + T SH+ NL+ GV +G+ KM +YAHFP+ + + K + I NFLGEKK R +L G T ++ +E+ + G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 65 AMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13 Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = -1 Query: 272 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 601 +++ N+ GVT+G+ YK++ VY+HFP + + I NF+GE R +++D VI + ++++ G D E V ++AA + Q ++K++D R F DGIY+ EK Sbjct: 90 AYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11 Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = -1 Query: 281 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 628 T + T S LI GVTKG+ Y M+ + HFP+ S+ + +E NFLGEK R ++DG V VK D + ++G D + +AA I + ++++ D R F DGI++ Sbjct: 63 TKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11 Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = -1 Query: 269 IRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 616 I T SH+ N++ GV + Y+++ Y HFP+ + N +E NFLGEK ++++ LD V V I +K + E+V++ D E A++I Q K KD R+F DGI++ K+ Sbjct: 67 INTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185 The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bpback to top |