DN617620

Overview
NameDN617620
Unique NameDN617620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = -1
Query:  272 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 628
            TSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:   63 TSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 40/120 (33.33%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A + + ++H+ N+ITG   GYRY ++ +  HFPI+  +  +   +++ N +GEK +R+  +L GV V       +++V++G+DI  V+++AA I     +   D R F DGIY+ +K  I
Sbjct:   69 ALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVI 183          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF+GEK  R+  ++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:   84 AMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NFLGE+  R   ++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:   66 AMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  RK  ++ D V V     VK +++ + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:   66 AMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = -1
Query:  269 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 622
            A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R         +I   KVK   +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:   64 AMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = -1
Query:  272 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 622
            A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R   +L G T ++     +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:   65 AMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  272 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 601
            +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R  +++D     VI   +   ++++ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   90 AYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = -1
Query:  281 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 628
            T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R   ++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   63 TKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  269 IRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 616
            I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   ++++  LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI++  K+
Sbjct:   67 INTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL6_HALWD2.690e-1543.0950S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_SULAC3.513e-1533.3350S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_ARCFU3.513e-1539.3250S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METS31.335e-1436.7550S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METST3.884e-1439.5050S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_METAC3.884e-1439.6750S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_METBF6.625e-1440.1750S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METKA4.294e-1333.9350S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_PICTO1.058e-1135.0450S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_NANEQ5.250e-1134.7150S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bp
TTTTGATTAGAAGATTAGTTCAAGAGGTAGATAAAAGATCAAAAATGCCA
GATGCATAGCTATAAAATCCATACATATATTGTGATGATAGCAATTGAAG
ACATAAAATTGAAATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACC
AAAAGCATGTCCTCAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAA
AAAAAATTCATAACATTACTATGACAAGAAAATTCGAAAGCTAATCATCA
TTCTTCTCCAAGTATGGTGCTTTTCTCACTGACATAGATCCCATCAAGAA
ATTTCCTAATGTCCTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCA
GCAGAGCGAGACACGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATC
CTTAACCTTATCGGACCTAATGACGGTAACACCATCAAGCATATCCACTT
TTCGAACCTTTTTCTCTCCAAGAAAGTTACGGATCTCAATGGCCTTGTTA
TTGTTACCGATGGAGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCAT
CTTGTAGCGATAGCCCTTGGTAACACCAGTGATGAGATTGCCGACATGGC
TGAGGGCAGTTCTGATGGCGGCGCTGGT
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