DN617615

Overview
NameDN617615
Unique NameDN617615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RICCN (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia conorii GN=ctaG PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.909e-38
Identity = 69/151 (45.70%), Postives = 99/151 (65.56%), Query Frame = -2
Query:  192 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T +E ++ +SK     T+ ++++F+A+V   +PW+FIP Q+ V++ PG++ L FY  EN S   I G S YNVTP KA  YF KI CFCFEEQ L  GE++ MP+
Sbjct:    3 KKSNKNLAFSLLGLIISMVLLSFASVPIYNLFCKVTGYGGT-----TAKETVSVYSK--VKGTKPIIIEFDANVDKDLPWRFIPRQQRVQIVPGQNTLVFYETENLSDNDIIGTSVYNVTPNKAGKYFVKIHCFCFEEQLLKAGERVLMPV 146          

HSP 2 Score: 42.743 bits (99), Expect = 1.909e-38
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V FYID +FE DP M  I  L LSY+FFKV E
Sbjct:  146 VTFYIDKDFELDPEMQDIKVLTLSYSFFKVRE 177          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RICFE (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia felis GN=ctaG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.334e-38
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = -2
Query:  192 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T +E ++ +SK     T+ ++++F+A+V   +PW+FIP Q+ V++ PG++ L FY  EN S+  I G S YNVTP KA  YF KI CFCFEEQ L   E++ MP+
Sbjct:    3 KKSNKNLAFSLLGLIISMVLLSFASVPIYNLFCKVTGYGGT-----TAKETVSVYSK--VKGTKPIIIEFDANVDKDLPWRFIPRQQRVQIVPGQNTLVFYETENLSNNDIIGTSVYNVTPNKAGKYFVKIHCFCFEEQLLKADEKVLMPV 146          

HSP 2 Score: 42.743 bits (99), Expect = 9.334e-38
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V FYID +FE DP M  I  L LSY+FFKV E
Sbjct:  146 VTFYIDKDFELDPEMQDIKVLTLSYSFFKVRE 177          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RICPR (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia prowazekii GN=ctaG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.346e-38
Identity = 69/151 (45.70%), Postives = 100/151 (66.23%), Query Frame = -2
Query:  192 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            +KS K L + L  L+ +MV  ++A+VP+Y  FC+ TGYGGT     T++E ++ +SK     T+ ++++F+A+V   +PW FIP Q+ V++ PG++ L FY AEN S+  I G S YNVTP KA  YF KI CFCFEEQ L   E++ MP+
Sbjct:    3 KKSNKNLAFSLLGLMMSMVLLSFASVPIYNLFCKVTGYGGT-----TIKETVSVYSK--VKGTKAIIIEFDANVDPNLPWHFIPRQKRVQIVPGQNTLVFYEAENLSNKDIIGTSIYNVTPNKAGKYFVKIHCFCFEEQLLKAREKVLMPV 146          

HSP 2 Score: 42.3578 bits (98), Expect = 9.346e-38
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V FYID +FE DP M+ I  + LSY+FFK+ E
Sbjct:  146 VTFYIDNDFERDPEMENIKVITLSYSFFKIRE 177          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RHIME (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium meliloti GN=ctaG PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.558e-37
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = -2
Query:  189 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 608
            A V  M+G  YAAVPLY  FC+ TGY GT QR E   + I            ++ V F+A+VA G+PW+F+P QR++ V+ GE+    Y A+N +STP TG +T+NVTPM A  YFNK+QCFCF E  L PGE+++MP++
Sbjct:   23 AFVAGMIGMAYAAVPLYDMFCRVTGYNGTTQRVEQASDLIL---------DEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVV 153          

HSP 2 Score: 30.8018 bits (68), Expect = 4.558e-37
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = -3
Query:   95 VFFYIDPEFETDPRMDGINNLILSYTFF 178
            V F++DPE        GI  L LSYTF+
Sbjct:  152 VVFFVDPEIVKPVETQGIKTLTLSYTFY 179          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RHILO (Cytochrome c oxidase assembly protein ctaG OS=Rhizobium loti GN=ctaG PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.007e-36
Identity = 71/140 (50.71%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  189 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 608
            A    M+G  YAAVPLY+ FCQATGYGGT QR   VE++ A     G V  RE+ V+F+A++A G+PW+F P QR + +K GE+  A Y A N+   P+TG +T+NV P  A  YFNK++CFCF +  L PGE +DMP+L
Sbjct:   20 AFFTGMIGMAYAAVPLYKMFCQATGYGGTTQR---VEKQYA-----GRVLDREITVRFDANIA-GVPWEFQPVQRSMTMKIGETVQAHYQATNKFDRPVTGRATFNVQPELAGPYFNKVECFCFTDTSLKPGETVDMPVL 150          

HSP 2 Score: 32.3426 bits (72), Expect = 1.007e-36
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = -3
Query:   80 VFFYIDPEFETDPRMDGINNLILSYTFFKVNED 178
            V FY+DP+    P +  +  + LSYT F V ++
Sbjct:  149 VLFYVDPDIVNVPELKDVKTITLSYTMFPVEKN 181          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_SINMW (Cytochrome c oxidase assembly protein ctaG OS=Sinorhizobium medicae (strain WSM419) GN=ctaG PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.710e-36
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = -2
Query:  189 ALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 608
            A V  MVG  YAAVPLY  FC+ TGY GT QR E          +   +   +V V F+A+VA G+PW+F P QR++ V+ GE+    Y A N +STP TG +T+NVTPM A  YFNK+QCFCF E  L PGE+++MP++
Sbjct:   23 AFVVGMVGMAYAAVPLYDMFCRVTGYNGTTQRVE---------QESDLILDEKVKVTFDANVAAGLPWEFAPVQRDIDVRIGETVQITYRARNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLQPGEEMEMPVV 153          

HSP 2 Score: 30.4166 bits (67), Expect = 1.710e-36
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = -3
Query:   95 VFFYIDPEFETDPRMDGINNLILSYTFF 178
            V F++DPE        GI  L LSYTF+
Sbjct:  152 VVFFVDPEIVKTVETKGIKTLTLSYTFY 179          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_MESSB (Cytochrome c oxidase assembly protein ctaG OS=Mesorhizobium sp. (strain BNC1) GN=ctaG PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.314e-35
Identity = 67/156 (42.95%), Postives = 96/156 (61.54%), Query Frame = -2
Query:  192 SHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 659
            S  + ++++R +      +  AMVG ++AAVPLYR FCQ TGYGGT QR E   +         T+  R + V+F+A+ + G+PW+F P QRE+ ++ GE+    Y A N + T  TG +TYNV P  A  YFNKI+CFCF +Q L PG+  +MP+
Sbjct:    8 SEVTRDRRNRGVAFVCAGVFVAMVGMSFAAVPLYRLFCQVTGYGGTTQRVEQYSD---------TILDRTINVRFDANTS-GVPWEFKPKQREITLRIGETTEIAYVARNNAPTTTTGTATYNVAPALAGAYFNKIECFCFTKQSLEPGQTYEMPV 153          

HSP 2 Score: 32.3426 bits (72), Expect = 5.314e-35
Identity = 12/33 (36.36%), Postives = 20/33 (60.61%), Query Frame = -3
Query:   80 VFFYIDPEFETDPRMDGINNLILSYTFFKVNED 178
            V F++DPE    P +  +  + LSYTF+  N++
Sbjct:  153 VQFFVDPEIVNVPELKNLKTITLSYTFYPNNQE 185          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_BRUSU (Cytochrome c oxidase assembly protein ctaG OS=Brucella suis GN=ctaG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.316e-35
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = -2
Query:  189 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 593
            M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A++A+G+PW F P QREV V+ GE+ +  Y A N       G +++NV P +A  YFNK++CFCF +  L PGE +++P++
Sbjct:   29 MIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVV 154          

HSP 2 Score: 38.5058 bits (88), Expect = 5.316e-35
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V F++DPEF  DP +  +  + LSYTFF +++
Sbjct:  153 VVFFVDPEFVNDPDLKDVKTITLSYTFFPIDK 184          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_BRUSI (Cytochrome c oxidase assembly protein ctaG OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ctaG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.316e-35
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = -2
Query:  189 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 593
            M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A++A+G+PW F P QREV V+ GE+ +  Y A N       G +++NV P +A  YFNK++CFCF +  L PGE +++P++
Sbjct:   29 MIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVV 154          

HSP 2 Score: 38.5058 bits (88), Expect = 5.316e-35
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V F++DPEF  DP +  +  + LSYTFF +++
Sbjct:  153 VVFFVDPEFVNDPDLKDVKTITLSYTFFPIDK 184          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_BRUME (Cytochrome c oxidase assembly protein ctaG OS=Brucella melitensis GN=ctaG PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.316e-35
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = -2
Query:  189 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 593
            M+G+ YA+VPLYR FCQ TGYGGT QR E   +         T+  + + V+F+A++A+G+PW F P QREV V+ GE+ +  Y A N       G +++NV P +A  YFNK++CFCF +  L PGE +++P++
Sbjct:   29 MIGAAYASVPLYRIFCQVTGYGGTTQRVEQYSD---------TILDKTIKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVV 154          

HSP 2 Score: 38.5058 bits (88), Expect = 5.316e-35
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V F++DPEF  DP +  +  + LSYTFF +++
Sbjct:  153 VVFFVDPEFVNDPDLKDVKTITLSYTFFPIDK 184          
The following BLAST results are available for this feature:
BLAST of DN617615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
COXZ_RICCN1.909e-3845.70Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_RICFE9.334e-3845.03Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_RICPR9.346e-3845.70Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]
COXZ_RHIME4.558e-3748.57Cytochrome c oxidase assembly protein ctaG OS=Rhiz... [more]
COXZ_RHILO1.007e-3650.71Cytochrome c oxidase assembly protein ctaG OS=Rhiz... [more]
COXZ_SINMW1.710e-3649.29Cytochrome c oxidase assembly protein ctaG OS=Sino... [more]
COXZ_MESSB5.314e-3542.95Cytochrome c oxidase assembly protein ctaG OS=Meso... [more]
COXZ_BRUSU5.316e-3543.70Cytochrome c oxidase assembly protein ctaG OS=Bruc... [more]
COXZ_BRUSI5.316e-3543.70Cytochrome c oxidase assembly protein ctaG OS=Bruc... [more]
COXZ_BRUME5.316e-3543.70Cytochrome c oxidase assembly protein ctaG OS=Bruc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01H07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617615 ID=DN617615; Name=DN617615; organism=Citrus sinensis; type=EST; length=669bp
GATTATGTCAAAAAATAACTTCCAGTTGCTGATAATGATGTCATTTCTCC
AAAGTAATTGCATTCTAGAAACTTCCCTAATCCTCATTAACCTTGAAAAA
TGTATAGGACAAGATCAAGTTGTTGATACCATCCATTCTGGGATCTGTTT
CAAACTCAGGGTCAATGTAAAAGAATACCTGCCCGTGTGAGAAGAGGCAT
GTCAATCTGCTCTCCGGGGAGAAGACGCTGCTCCTCAAAGCAAAAGCATT
GTATTTTATTGAAGTAGACAGCAGCCTTCATAGGGGTGACATTATAAGTA
GAGACACCAGTTATTGGAGTCGAACTTCGATTCTCAGCAGTGTAAAATGC
AAGTGCGCTTTCTCCAGGCTTTACCCTTACCTCTCTTTGTGTTGGAATAA
ACTTCCATGGCATTCCATCAGCTACATCAGCGTTGAATTGCACAACAACT
TCCCTTGTAGTGACAGTTCCATCTTTGGAATGCCGAGCAATCTTTTCTTC
AACAGTCTCTTTTCGTTGAACAGTACCACCATAGCCAGTAGCCTGGCAGA
ATCTCCTATACAAAGGTACGGCGGCATAAGTACTTCCAACCATTGCAAAA
ACCAATGCTGTGAGGTATAAAAGCATCTTTCTTGATTTCTGCTCTGTTGA
AGCATGAGAAGCATAATGA
back to top