DN617615

Overview
NameDN617615
Unique NameDN617615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RHOS4 (Cytochrome c oxidase assembly protein ctaG OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ctaG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 61/141 (43.26%), Postives = 82/141 (58.16%), Query Frame = -2 
Query:  192 LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 614
            L  +V  M  +++AAVP Y  FC+ TG+ GT                   V  R V V+F+A    GMPW+F P QRE+++K GE+ LAFY A N +   + G ++YNVTP  A  YF KI CFCF EQ L PGE+++MP+
Sbjct:   13 LVLVVAVMGAASFAAVPFYNWFCRVTGFAGTTA---------VATEAPAEVLDRTVKVRFDASREAGMPWEFRPLQREMKLKIGETGLAFYEAYNPTDRTVAGTASYNVTPDAAGGYFAKIACFCFTEQVLAPGERVEMPV 144
[Close]
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RHOS1 (Cytochrome c oxidase assembly protein ctaG OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=ctaG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = -2 
Query:  192 LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 614
            L  +V  M  +++AAVP Y  FC+ TG+ GT                   V  R V V+F+A    GMPW+F P QRE+ +K GE+ LAFY A N +   + G ++YNVTP  A  YF KI CFCF EQ L PGE+++MP+
Sbjct:   13 LVLVVAVMGAASFAAVPFYNWFCRVTGFAGTTA---------VATEAPAEVLDRTVKVRFDASREAGMPWEFRPLQREMELKIGETGLAFYEAYNPTDRTVAGTASYNVTPDAAGGYFAKIACFCFTEQVLAPGERVEMPV 144
The following BLAST results are available for this feature:
BLAST of DN617615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
COXZ_RHOS42.222e-2643.26Cytochrome c oxidase assembly protein ctaG OS=Rhod... [more]
COXZ_RHOS13.790e-2643.26Cytochrome c oxidase assembly protein ctaG OS=Rhod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617615 ID=DN617615; Name=DN617615; organism=Citrus sinensis; type=EST; length=669bp
GATTATGTCAAAAAATAACTTCCAGTTGCTGATAATGATGTCATTTCTCC
AAAGTAATTGCATTCTAGAAACTTCCCTAATCCTCATTAACCTTGAAAAA
TGTATAGGACAAGATCAAGTTGTTGATACCATCCATTCTGGGATCTGTTT
CAAACTCAGGGTCAATGTAAAAGAATACCTGCCCGTGTGAGAAGAGGCAT
GTCAATCTGCTCTCCGGGGAGAAGACGCTGCTCCTCAAAGCAAAAGCATT
GTATTTTATTGAAGTAGACAGCAGCCTTCATAGGGGTGACATTATAAGTA
GAGACACCAGTTATTGGAGTCGAACTTCGATTCTCAGCAGTGTAAAATGC
AAGTGCGCTTTCTCCAGGCTTTACCCTTACCTCTCTTTGTGTTGGAATAA
ACTTCCATGGCATTCCATCAGCTACATCAGCGTTGAATTGCACAACAACT
TCCCTTGTAGTGACAGTTCCATCTTTGGAATGCCGAGCAATCTTTTCTTC
AACAGTCTCTTTTCGTTGAACAGTACCACCATAGCCAGTAGCCTGGCAGA
ATCTCCTATACAAAGGTACGGCGGCATAAGTACTTCCAACCATTGCAAAA
ACCAATGCTGTGAGGTATAAAAGCATCTTTCTTGATTTCTGCTCTGTTGA
AGCATGAGAAGCATAATGA
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