DN617610

Overview
NameDN617610
Unique NameDN617610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  448 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 597
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGG
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGG 51          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1
Query:  469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1
Query:  469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1
Query:  469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 43          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1
Query:  469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1
Query:  469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 53/142 (37.32%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  175 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYP 591
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFP 185          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  136 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYP 591
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP 185          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   25 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 468
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  205 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 432
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  214 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPG 594
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG 484          
The following BLAST results are available for this feature:
BLAST of DN617610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB21_RAPSA1.175e-1784.31Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC1.535e-1795.35Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.535e-1795.35Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.535e-1795.35Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.535e-1795.35Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.535e-1795.35Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB12_SOLLC1.697e-1637.32Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.895e-1636.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU1.588e-1436.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR5.109e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617610 ID=DN617610; Name=DN617610; organism=Citrus sinensis; type=EST; length=598bp
ACCAACAACTCCGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTC
CTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGC
TGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACT
ACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGGTACAGAATTG
CTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
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