DN617610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17 Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 Query: 448 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 597 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGG Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGG 51
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 43
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 469 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 597 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16 Identity = 53/142 (37.32%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 175 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYP 591 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++P Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFP 185
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16 Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 136 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLYP 591 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++P Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP 185
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14 Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 1 Query: 25 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 468 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132
BLAST of DN617610 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 205 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 432 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 73.1738 bits (178), Expect = 1.138e-12 Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 1 Query: 214 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPG 594 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ + +D+ + A+ A QVV +E +R GG L E D YPG Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG 484 The following BLAST results are available for this feature:
BLAST of DN617610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617610 ID=DN617610; Name=DN617610; organism=Citrus sinensis; type=EST; length=598bpback to top |