DN617600

Overview
NameDN617600
Unique NameDN617600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:321..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.942e-31
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++LA+ RD  SGGV   V I  EGV     PGD LP +H+E
Sbjct:   67 ADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFHDE 217
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.313e-31
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI + GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPRFYDE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.313e-31
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI + GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.313e-31
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI + GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.652e-31
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI   GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIYLVTITVAGVDHRVILGDELPKFYDE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.640e-31
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++LA+ RDG+SGGV+  VTI + GV  +   GD LP ++ E
Sbjct:   70 ADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYGE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.259e-30
Identity = 65/151 (43.05%), Postives = 96/151 (63.58%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG  LGG +  QPFAI      ++YG+ D A+K GM+ EE  +    A++LA++RDG+SGGV+  VTI + GV  +   G+ LP +++E
Sbjct:   70 ADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.663e-30
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SLA++RDG+SGGV   VTI+ +G   K   G+ LP ++++
Sbjct:   68 ADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.663e-30
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +SLA++RDG+SGGV   VTI+ +G   K   G+ LP ++++
Sbjct:   68 ADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217
[Close]
BLAST of DN617600 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.161e-30
Identity = 62/151 (41.06%), Postives = 93/151 (61.59%), Query Frame = 2 
Query:    2 ADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 454
            AD+Q ++D   Y L  H ++L +P  V  AAN+VR ++Y  +  L   ++V GWD+ EGG++YG  + G +I QPFAI      Y+YG+ D A+K GM+ EE  +    A++LA+ RDG+SGGV+   TI   GV  +   GD LP +++E
Sbjct:   70 ADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGVIYLATITGAGVDHRVILGDELPRFYDE 219
The following BLAST results are available for this feature:
BLAST of DN617600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PB6LA_SALSA1.942e-3143.05Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_MUSSI3.313e-3143.05Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB3.313e-3143.05Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MOUSE3.313e-3143.05Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSB9_MUSPL5.652e-3143.05Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSDU9.640e-3143.05Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_HUMAN1.259e-3043.05Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PSB9_SALSA3.663e-3042.38Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY3.663e-3042.38Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB9_BOVIN8.161e-3041.06Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617600 ID=DN617600; Name=DN617600; organism=Citrus sinensis; type=EST; length=486bp
TGCAGATTCTCAGACTGTCTCCGACTATGTTCGCTACTTCCTTCATCAAC
ACACGATACAGCTAGGGCAGCCTGCAACTGTTAAAGTTGCTGCCAATCTT
GTCAGGCTGCTATCCTACAATAACAAGAACTTTTTGCAAACTGGAATGAT
TGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAATATATGGAGTTCCTC
TTGGAGGAACAATAATTGAGCAGCCTTTTGCAATTGGAGGATCTGGCTCA
AGTTACCTGTATGGGTTTTTTGATCAGGCATGGAAAGAGGGAATGACCAA
GGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTTCTCTTGCCATTGCGC
GTGATGGTGCTAGTGGAGGTGTTGTTCGAACCGTCACAATTAATTCTGAA
GGAGTGAGCAGAAAGTTCTACCCTGGCGACACACTTCCATTGTGGCATGA
GGAGTTGGAGCCGCAAAATTCGTTGCTGGACATGAT
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