DN617591

Overview
NameDN617591
Unique NameDN617591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617591_ssr427 microsatellite DN617591_ssr427:427..436. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5735 contig Csv1_Contig5735:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP   F+KEVTK   A + EW NWNWRS+GDLM+NGA+FT                  + S+LVG +T S+GAL C+ G  C
Sbjct:  337 APGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCRIGTLC 418
[Close]
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP   F+KEVTK   + + EW+ WNWRS+GDLM+NGA+FT                  +P+++V  +T S+GAL C+ G RC
Sbjct:  359 APGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCRIGMRC 440
[Close]
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 3 
Query:    6 AAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AAP    +KEVTK  D   +EW  WNWRSE DL+VNGAFFT                  +P+++V  IT SAGAL C++G  C
Sbjct:  370 AAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFT-PSGEGASGDSQTLSLPAKPASMVDAITASAGALSCRRGKPC 451
The following BLAST results are available for this feature:
BLAST of DN617591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PEL14_ARATH7.292e-1546.34Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH8.062e-1442.68Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH6.825e-1345.78Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617591 ID=DN617591; Name=DN617591; organism=Citrus sinensis; type=EST; length=607bp
ATTCTGCTGCCCCTGACAGGGCGTTCAGCAAAGAAGTGACAAAACATGAG
GATGCACCAGAAAGTGAATGGAGGAATTGGAACTGGAGATCAGAGGGGGA
CTTGATGGTGAACGGTGCATTTTTTACAGCATCAGGAGCAGGCGCCTCAT
CGAGCTATGCAAGAGCTTCGAGCCTAGGTGCTAGACCATCGGCACTTGTC
GGTCCCATAACGGGCTCTGCTGGTGCACTTATCTGCAAGAAGGGGGCTCG
TTGCTGATTATAATTATGACCCCATTTGAAAACAATATTATTTTTTTCTG
CTAGTGATTATTGCGTTTGTTGGGATATAATTAGTTAGATAGAATTAATT
AAAACGGGTAGAAGCCAAAATTGAGGGAACAGGAGAAAAGCCTAACTATA
GTATTTACTTGGCTTTTTCTTCTTCCCTCTCTCTCTTTTTTTTTTTTTTT
TTTTTTTTAATCCTGTGTGCTTTCTACTCTTGTCTTTTTCTTTTTCTTTT
TTCTTTTCTTTCATTTTTACTCAAATCTGATTATTACAACCTCGACTTGT
TGCTCTTAGAACTGTCCGGGGATTCTTTCGAGAATCTTGGCGGGCTAAGA
TAATGCA
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