DN617589

Overview
NameDN617589
Unique NameDN617589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:18..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617589 vs. ExPASy Swiss-Prot
Match: ARAE_BACSU (Arabinose-proton symporter OS=Bacillus subtilis GN=araE PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  254 GFTCGYSSPTQAEIISDLK--LTISEF--SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 658
            G   GY +   +  I  LK   ++S F   +  S   +G +VG   SG +++  GR+  LM AA+   I  ++ + S+D S L + R++ G G+G+ S     YI E AP  +RGSL S+ QL   +GI   Y + L V
Sbjct:   34 GLLYGYDTAVISGAIGFLKDLYSLSPFMEGLVISSIMIGGVVGVGISGFLSDRFGRRKILMTAALLFAISAIVSALSQDVSTLIIARIIGGLGIGMGSSLSVTYITEAAPPAIRGSLSSLYQLFTILGISATYFINLAV 172          
BLAST of DN617589 vs. ExPASy Swiss-Prot
Match: RGT2_YEAST (High-affinity glucose transporter RGT2 OS=Saccharomyces cerevisiae GN=RGT2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 39/109 (35.78%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  314 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA 637
            T S+ +I  S  ++G   GA+ +  I++  GRK ++M + AV   IG  +   S     L +GR++ G G+G+IS  VP+Y AE A +N+RG++ S  Q ++TIG++++
Sbjct:  141 TTSQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFSIGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIGLLVS 249          
BLAST of DN617589 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 38/142 (26.76%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  236 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN 661
            LG + FG+  G  S     + +  +LT  E     S    GA++ ++  G I +  GR+ S+M + +  + G +I+  +    +L +GR+  GF + + S    +Y++EI   + RG+L S+ +  +T+GI+++Y +  F++
Sbjct:   17 LGGLIFGYELGIISGALLMLKTVFQLTCFEQEALVSAVLFGALLASLIGGFIIDRSGRRTSIMGSNLVVLAGSIILIATSSFWWLVVGRVTVGFAISISSMACCIYVSEIVRPHQRGTLVSLYETGITVGILISYAMNYFLS 158          
BLAST of DN617589 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  332 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 646
            +F S   +  +     +      +GR+ +++IA V  IIG  + + ++D + L  GR+L G GVG  +  VP++++EIAP  +RG L  + QL+VTIGI+ A L+
Sbjct:   85 LFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV 189          
BLAST of DN617589 vs. ExPASy Swiss-Prot
Match: RCO3_NEUCR (Probable glucose transporter rco-3 OS=Neurospora crassa GN=rco-3 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/110 (30.00%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  323 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 652
            E ++  ++ + G  +GA+ +  + ++ GR+ SL+ A    +IG ++   + +   L  GR + G G+G++S  VP+Y +E+AP+ +RG+L    QLS+T+G++ A ++ +
Sbjct:   72 ESALIVAMLSAGTAIGALLAAPLGDHYGRRRSLIGAIGIFVIGAILQVCAYNIDLLVAGRTVAGVGIGIVSVLVPLYQSEMAPKWIRGTLVCTYQLSITMGLLAAAVVNI 181          
The following BLAST results are available for this feature:
BLAST of DN617589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ARAE_BACSU3.475e-1133.81Arabinose-proton symporter OS=Bacillus subtilis GN... [more]
RGT2_YEAST4.539e-1135.78High-affinity glucose transporter RGT2 OS=Saccharo... [more]
GTR10_XENLA4.539e-1126.76Solute carrier family 2, facilitated glucose trans... [more]
STP13_ARATH5.928e-1135.24Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
RCO3_NEUCR5.928e-1130.00Probable glucose transporter rco-3 OS=Neurospora c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617589 ID=DN617589; Name=DN617589; organism=Citrus sinensis; type=EST; length=671bp
TTCCATCAAATCAATAATCATCCAAACACCAACACCGTCTCCGTCGATCG
TAAAGTAACGAGAGGCAATGAGTTTTAGAGACGATAATGAAGAAGCGGCT
AATCTCCGTAAGCCGTTTCTCCACACGGGGAGTTGGTACAAAATGGGCTC
CAGACAGTCGAGTATCATGTCGTCATCGGCTCAGATGCTTCGTGACGGCT
CCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCGCCCTCGGCCCCATCCAA
TTCGGTTTCACTTGTGGCTACTCTTCACCTACGCAAGCCGAAATCATCAG
CGATCTTAAACTTACAATTTCGGAGTTCTCTATATTTGGCTCTTTAGCCA
ATGTGGGTGCTATGGTTGGTGCAATAGCTAGCGGTCAGATAGCAGAGTAC
ATTGGCCGAAAAGGGTCCCTAATGATTGCTGCTGTTCCTAATATTATAGG
ATGGCTCATCATATCTTTCTCCAAAGATTCCTCGTTTTTATTTATGGGAA
GGTTGTTGGAAGGATTTGGTGTTGGTGTAATCTCTTACACGGTGCCCGTG
TACATAGCTGAGATAGCACCTCAAAATATGAGAGGAAGTCTTGGATCTGT
CAATCAGCTCTCAGTTACGATTGGAATTATGCTGGCGTATCTATTGGGGC
TTTTTGTCAATTGGAGAGTGC
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