DN617584

Overview
NameDN617584
Unique NameDN617584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:22..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.774e-40
Identity = 74/130 (56.92%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN-DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W    ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ + C+    +WC PG SI VTATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++R++PC +
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQR 154          

HSP 2 Score: 23.8682 bits (50), Expect = 4.774e-40
Identity = 10/16 (62.50%), Postives = 10/16 (62.50%), Query Frame = 2
Query:  524 PVCEERGIRFTVNGHS 571
            P     GIRF VNGHS
Sbjct:  151 PCQRSGGIRFAVNGHS 166          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.865e-39
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W    ATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY++ C +DP+WCLPG+I +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +R+I CA+
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPD--YSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCAR 180          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.382e-39
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W    ATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +R+IPC+K
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSK 183          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.382e-39
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W    ATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +R+IPC+K
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSK 177          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.724e-39
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN----DPKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            G W   HATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+R++ C +K
Sbjct:   28 GRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRK 166          

HSP 2 Score: 23.8682 bits (50), Expect = 6.724e-39
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  542 GIRFTVNGHS 571
            G+RFT+NGHS
Sbjct:  168 GMRFTINGHS 177          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.422e-38
Identity = 73/141 (51.77%), Postives = 90/141 (63.83%), Query Frame = 3
Query:  117 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            C         GGW SG ATFY              YGNLY+QGYG   AALSTALFN G SCG CY + C+    P+WC  G+ + +TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C
Sbjct:   15 CITSASAAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKC 155          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.403e-38
Identity = 70/130 (53.85%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  150 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            GW  G ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY + C+    P+WC  G+ + +TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKC 155          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.403e-38
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  159 SGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            SG ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY++ C+ ++ KWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+++ C +K
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRK 154          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.584e-38
Identity = 69/135 (51.11%), Postives = 92/135 (68.15%), Query Frame = 3
Query:  135 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            G + G W + HATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ C NDP+WC+ G SI+VTATNFCPP        GG C+PP  HFD+++P + +IA Y++GI+P+ +R++ C +
Sbjct:   32 GGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKR 158          

HSP 2 Score: 25.0238 bits (53), Expect = 5.584e-38
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  542 GIRFTVNGHS 571
            GIRFT+NGHS
Sbjct:  161 GIRFTINGHS 170          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.057e-38
Identity = 70/132 (53.03%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            G W+  HATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KC + P  C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+R++PC K
Sbjct:   40 GPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVK 171          
The following BLAST results are available for this feature:
BLAST of DN617584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA8_ORYSJ4.774e-4056.92Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH2.865e-3953.91Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP26_ARATH6.382e-3953.91Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH6.382e-3953.91Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP21_ORYSJ6.724e-3951.08Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.422e-3851.77Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ5.403e-3853.85Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ5.403e-3854.26Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH5.584e-3851.11Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP32_ORYSJ7.057e-3853.03Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617584 ID=DN617584; Name=DN617584; organism=Citrus sinensis; type=EST; length=571bp
GCATCTCTCTTTTTCTTAACAAAAAAACACATAAACATAAGCAGCCAGCA
GTAGCAGCCATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTT
GTTTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTG
GGTGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGC
ACAATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGG
GACTAACACTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCT
GTGGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTC
CCCGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGC
CCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTG
ACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATC
GTCCCAATTTCCTTCAGAAAGATCCCGTGTGCGAAGAAAGAGGAATAAGG
TTTACCGTCAATGGACACTCA
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