DN617584

Overview
NameDN617584
Unique NameDN617584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:22..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPK-WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W    ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY + C+     WC PG SI +TATN CPPN A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+++PC K
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQK 152          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 7.802e-37
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 3
Query:  156 QSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            QS  ATFY              YGNLY+ GYG   AALS+ALFN+G  CG+CY + C+ +  KWC PG  SI +TATN CPPN AL +++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++++PC +
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQR 158          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.738e-36
Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDP--KWCLP-GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            W    ATFY              YGNLY QGYG   AALSTALFN+G +CG CY + C+ D   +WC P G++ VTATN CPPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +R++ C ++
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRR 158          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            G W+  HATFY              YGNL++ GYG +TAALST LFN+G  CG C+++ C   P      S +VTATN CPPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++R++PC +
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQR 164          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  144 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            G  W++  ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KC + P  C  GS   +VTATN CPPN   +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+R++ C K
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKK 159          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 69/132 (52.27%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSND--NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W   HATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+M+C      C  GS  I VTATN CPPN A   D   GGWCNPP  HFD+++PAF+++A +RAGIVP+ +R++PCA+
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCAR 167          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 67/129 (51.94%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            W    ATFY              YGNLY QGYG + AALS ALFN+G SCG CY + C+    P+WC  G+ + VTATN CPPN AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++++ C
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRC 156          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  135 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            G+    W S  ATFY              YGN+YS GYGTNT ALS+AL+ +G SCG+CY + C+ +  +WC  G S+ VTATN+CPPN + S D GGWCNPP +HFDM++PA+  IA Y +GIVP+ + + PC +
Sbjct:   21 GEAAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRR 156          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.786e-32
Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W  G ATFY                  N     Y T TAALST LF +G  CG CYE++C   P WC PGS  +++T TN CPPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +R++PC +
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQR 182          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.861e-30
Identity = 68/130 (52.31%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  150 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            GW  G ATFY              YGNLY QGYG N AALST LFNNG SCG CY + C  D  P  C  G +I VT TNFCPPN  L    GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDL--PYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKC 149          
The following BLAST results are available for this feature:
BLAST of DN617584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP33_ORYSJ3.502e-3753.08Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ7.802e-3753.08Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP27_ORYSJ1.738e-3652.27Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA7_ARATH3.872e-3648.46Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ARATH1.127e-3548.87Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP30_ORYSJ2.510e-3552.27Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ4.281e-3551.94Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ5.591e-3549.26Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP17_ORYSJ5.786e-3249.24Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ1.861e-3052.31Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617584 ID=DN617584; Name=DN617584; organism=Citrus sinensis; type=EST; length=571bp
GCATCTCTCTTTTTCTTAACAAAAAAACACATAAACATAAGCAGCCAGCA
GTAGCAGCCATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTT
GTTTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTG
GGTGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGC
ACAATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGG
GACTAACACTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCT
GTGGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTC
CCCGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGC
CCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTG
ACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATC
GTCCCAATTTCCTTCAGAAAGATCCCGTGTGCGAAGAAAGAGGAATAAGG
TTTACCGTCAATGGACACTCA
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