DN617584

Overview
NameDN617584
Unique NameDN617584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:22..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.576e-29
Identity = 64/129 (49.61%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            W  G ATFY              YGNLY QGYG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+CPPN  L    GGWCN    HFDM++PA+  I  Y AGI+PI ++++ C
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDL--PYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKC 149          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.576e-29
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  135 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRKIPCAKK 539
            G    GW   HAT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C+   DPKWCL G ++ VTATNFCP     +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +R++ C ++
Sbjct:   21 GMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCP-----TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRR 154          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.510e-29
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  117 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            C R   G Y   W+ G AT+                 YG+L    YG  TA +S ALF  G +CG CYE++C N   WCL GS  ++VTAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FR++ C
Sbjct:   21 CIRLGNGGYEE-WRMGSATYIKESLGHPLNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSC 161          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.334e-28
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            W+   AT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++C +D +WC+PG SII+TATNFC PN     D GG CNPP +HF +   AF +IA ++AG +P+ +R+I C K+
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKE 169          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.742e-28
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            W+S  A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KC +D K+CLPG SI+VTATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +R++ C +
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLR 160          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.069e-28
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  222 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            YG+L   GYG  TAALSTALFN+G SCG+CYE+ C  +P+ CL GSI +TAT+ CPP  A       WC  P +HFD++ P F++IAQ +A +VP+ +R++PCAK
Sbjct:   69 YGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAK 166          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.249e-26
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  222 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            YG+L    +   +A LS  LFN G SCG+C E++C N  +WCL GS  ++VTAT+FCPPN  LS+D GGWCN P +H +++  AF  IA+ RA ++PI +R++ C ++
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRR 160          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.893e-24
Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  153 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPC 530
            W  G ATFY              YGNLY Q YG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+           GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKC 140          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.336e-19
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            G W  GHATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K ++        +++VTATN  PP +   N   G      +HFD+  PAFL IA+ + G+VP+S+RK+ C ++
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPV---NGMKG------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQ 194          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 43/137 (31.39%), Postives = 62/137 (45.26%), Query Frame = 3
Query:  144 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRKIPC 530
            G GW SG AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY++KC  + + C    + V  T+ CP         GG C     HFDM+  AF  +A          AG++ I ++++PC
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPC 168          
The following BLAST results are available for this feature:
BLAST of DN617584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP19_ORYSJ1.576e-2949.61Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH1.576e-2945.32Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP16_ORYSJ3.510e-2945.77Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.334e-2843.85Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ1.742e-2846.51Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH5.069e-2853.33Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH1.249e-2647.22Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ9.893e-2444.96Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ7.336e-1939.69Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ7.353e-1131.39Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617584 ID=DN617584; Name=DN617584; organism=Citrus sinensis; type=EST; length=571bp
GCATCTCTCTTTTTCTTAACAAAAAAACACATAAACATAAGCAGCCAGCA
GTAGCAGCCATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTT
GTTTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTG
GGTGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGC
ACAATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGG
GACTAACACTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCT
GTGGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTC
CCCGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGC
CCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTG
ACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATC
GTCCCAATTTCCTTCAGAAAGATCCCGTGTGCGAAGAAAGAGGAATAAGG
TTTACCGTCAATGGACACTCA
back to top