DN617582

Overview
NameDN617582
Unique NameDN617582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617582_ssr36 microsatellite DN617582_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:36..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_THET2 (Adenylate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=adk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 63/180 (35.00%), Postives = 107/180 (59.44%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMERRILNRN--HGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 703
            LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ ++L+++ + E    + + DGFPR     A  EA+ ++  E       V+  +  EEE+ RRIL R    GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D      EV+  ++A
Sbjct:   10 LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----RVIFDGFPR---TLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRA 182          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_STRMU (Adenylate kinase OS=Streptococcus mutans GN=adk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25
Identity = 68/202 (33.66%), Postives = 108/202 (53.47%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFD----CSEEEMERRILNRNHG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 706
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E GT+ ++ I +G++VP EVT  ++++ + ES   K  FL+DG+PR  E   A + +     ++ + V+  D    C  E +  RI+NR  G                    REDD  ET+++R  V +    P+++YY  KG V  I+  + +  VF+ +  V
Sbjct:    6 MGLPGAGKGTQAAKIVEKFGLAHISTGDMFRAAMANQTEMGTLAKSFIDKGELVPDEVTNGIVKERLSESDITKKGFLLDGYPRTIEQAHALDEILSKLNLKLDGVINIDVDPACLVERLSGRIINRKTGETYHKVFNPPADYNEDDYYQREDDKPETVKRRLDVNIAQGHPIIEYYRNKGLVYDIEGNQDINLVFETIAKV 207          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_THEEB (Adenylate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=adk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.946e-25
Identity = 65/181 (35.91%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  191 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR------NHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 703
            GGPGSGKGTQ A +    G  H+S GD+LRAE  +G+  G   Q+ +  G++VP +V + ++   +++      +L+DGFPRN    A FE + K    + +++LF D     ++ R LNR         R DD  ETI KR +V+   +LP++Q Y +  K   ID  + + EV  A++A
Sbjct:    7 GGPGSGKGTQAAILTTLLGIPHISTGDILRAERAAGTLLGQQAQSYMDRGELVPDQVIVDMVANRLQQPDTAAGWLLDGFPRNGAQAAVFEEMLKSIHQDYDYLLFLDVPAAILQERALNRAKQAVNGQQRSDDTPETILKRLQVYERETLPMIQQYMSHPKFVPIDGTRTIEEVTAAIQA 187          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_AQUAE (Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 63/198 (31.82%), Postives = 106/198 (53.54%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNHG----------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 706
            LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  R                         REDD  E I+KR +V+ E + P+++YY+ KG +R IDA+KPV EV+  V  V
Sbjct:    6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEV 201          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_SYNR3 (Adenylate kinase OS=Synechococcus sp. (strain RCC307) GN=adk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 60/175 (34.29%), Postives = 106/175 (60.57%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 703
            +G PG+GKGTQ   +  + G  HLS GDLLRAE+K+GSE G   + ++  G++V   + + +++  + +S +  +L+DGFPRN     A +A+     +P + VL  +  ++E+ +R+L R  GR DDN E IR R  V+ E + P++ +YE +G+++++ +   +  V + + A
Sbjct:    8 VGPPGAGKGTQAERLAANHGLLHLSTGDLLRAEVKAGSELGKEAEAVMNRGELVSDALVLAIVRSRL-QSHSGGWLLDGFPRNLAQAEALDALLSELNQPLQSVLLMELDDDELVQRLLAR--GRADDNEEVIRHRLSVYREQTAPLINHYEQRGQLKRVVSTGTIEAVAEQITA 179          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_STRAW (Adenylate kinase OS=Streptomyces avermitilis GN=adk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 71/209 (33.97%), Postives = 108/209 (51.67%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRN------------------------------HGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV----FDAVK 700
            +G PG+GKGTQ A + ++ G  H+S GDL RA I   +E G + ++ + EG +VP EVTI + +  ME+    + FL+DGFPRN +   A + + K E    + VL  +  E+E+ +RI  R                               + R+DD+ ET+R+R +V+   + P++ YY A+G V  I A  PV EV     DA+K
Sbjct:    6 VGPPGAGKGTQAAFLAKNLGIPHISTGDLFRANISQQTELGKLAKSYMDEGNLVPDEVTIAMAKDRMEQPDAVNGFLLDGFPRNVKQAEALDEMLKSEGMKLDAVLDLEVPEDEVVKRIAGRRICRNDSAHVFHVSYKPPKQEGVCDVCGGELYQRDDDSEETVRRRLEVYHTQTEPIIDYYRAQGLVVTISALGPVEEVTQRAMDALK 214          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_SYNS9 (Adenylate kinase OS=Synechococcus sp. (strain CC9902) GN=adk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 59/173 (34.10%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 697
            LG PG+GKGTQ A I +  G  HLS GDLLR+E+ +GSE G   + ++  G++V  ++ + +++  M+    + +L+DGFPR      A E +    K   E V+  +  +  +  R+L+R  GR DDN + IR R +V+ + + P++ YY+ KG +  + A   V E+ + +
Sbjct:    8 LGPPGAGKGTQAARICDSNGMKHLSTGDLLRSEVAAGSELGKEAEAVMNRGELVSDQLVLAIVESQMKALSGEGWLLDGFPRTVPQAEALEPLLNELKQPIEAVVLLELDDAVLITRMLSR--GRADDNEDVIRNRLEVYRDKTAPLISYYQNKGLLISVPAQGSVEEITERI 178          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_PARL1 (Adenylate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=adk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 64/182 (35.16%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCS--EEEMERRILNRNHG-REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 706
            LG PG+GKGTQ   + E  G   LS GD+LRA +  GSE G + + ++  G++VP +V + ++   +E+    + +++DGFPRN     A + +     T ++    L  D S   + +E R      G R DDN E + KR KV+ E + P++ YY+AKGK+R +D  K + EV   ++ V
Sbjct:    6 LGPPGAGKGTQAKRLEEAHGLVQLSTGDMLRAAVAQGSEVGKVAEGIMARGELVPDDVVVGIIADRIEQPDAVNGYILDGFPRNVAQAEALDKMLAGKGTTLDAVVELGVDDSILLKRIETRAAETAGGPRADDNAEALAKRLKVYHEQTAPLIAYYKAKGKLRTVDGMKSMDEVTGQIETV 187          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_PARD8 (Adenylate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=adk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 61/176 (34.66%), Postives = 98/176 (55.68%), Query Frame = 2
Query:  191 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRN--HGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 700
            G PGSGKGTQ   I++ +G  H+S GD+LR E+K+ +E G + ++ I++G++VP E+ + +L   ++     K +I DGFPR      A + +      +   +L     EEE+ +R+L R    GR DDN+ETI+ R  V+   + P+  YY  +GK   I     + E+F  +K
Sbjct:    8 GAPGSGKGTQSELIIKEYGLDHISTGDVLRGEMKAETELGKIAKDYIEKGQLVPDELIVDMLANVLDSKKPAKGVIFDGFPRTIPQAKALKKMLNERGTDVSVMLNLQVEEEELIKRLLERGKVSGRSDDNLETIKSRLDVYHTQTAPLADYYVGEGKHVAIKGMGTIEEIFGRIK 183          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_EXISA (Adenylate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=adk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24
Identity = 67/206 (32.52%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR-----------------------------NHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 706
            +G PG+GKGTQ A IVE +   H+S GD+ RA IK G+  G   ++ + +G++VP EVTI ++++ + +   +K FL+DGFPR      A E++ K    + + V+  D   E +  R+  R                                REDD  ET+R+R  V +E S P++ +Y  KG +R +D  +P+  V+  VKA+
Sbjct:    6 MGLPGAGKGTQAAKIVEEYQIPHISTGDMFRAAIKGGTPLGKEAKSFMDKGELVPDEVTIGIVRERLSQDDTEKGFLLDGFPRTVAQAEALESLLKDLGKQIDHVVNIDVDAEILVPRLTGRWICPTCGATYHVIFNPPKVEGICDVDGSALMQREDDKEETVRRRLDVNIEQSKPLIDFYAEKGYLRTLDGDRPIDVVYADVKAL 211          
The following BLAST results are available for this feature:
BLAST of DN617582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_THET23.075e-2535.00Adenylate kinase OS=Thermus thermophilus (strain H... [more]
KAD_STRMU6.850e-2533.66Adenylate kinase OS=Streptococcus mutans GN=adk PE... [more]
KAD_THEEB8.946e-2535.91Adenylate kinase OS=Thermosynechococcus elongatus ... [more]
KAD_AQUAE1.168e-2431.82Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 S... [more]
KAD_SYNR31.993e-2434.29Adenylate kinase OS=Synechococcus sp. (strain RCC3... [more]
KAD_STRAW1.993e-2433.97Adenylate kinase OS=Streptomyces avermitilis GN=ad... [more]
KAD_SYNS95.799e-2434.10Adenylate kinase OS=Synechococcus sp. (strain CC99... [more]
KAD_PARL17.573e-2435.16Adenylate kinase OS=Parvibaculum lavamentivorans (... [more]
KAD_PARD87.573e-2434.66Adenylate kinase OS=Parabacteroides distasonis (st... [more]
KAD_EXISA9.891e-2432.52Adenylate kinase OS=Exiguobacterium sp. (strain AT... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617582 ID=DN617582; Name=DN617582; organism=Citrus sinensis; type=EST; length=755bp
CATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAA
ACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAG
TTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGC
TACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAG
GCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATAC
ACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTC
TGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTC
CTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGA
AATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGC
TGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTG
ACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCACGGA
AGAGAAGATGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTT
AGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAAGTTC
GGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGTTAAA
GCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTCTCTGT
CCAGA
back to top