DN617582

Overview
NameDN617582
Unique NameDN617582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617582_ssr36 microsatellite DN617582_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:36..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_ECO27 (Adenylate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-HG----------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKAV 706
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R  H                             R+DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_PROMA (Adenylate kinase OS=Prochlorococcus marinus GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 58/174 (33.33%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE-AVTKIEP--EFVLFFDCSEEEMERRILNRNHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 700
            LG PG+GKGTQ + I +  G+ HLS GDLLR E+  G++ G   + ++ +G++V  E+ I +++K + +  ++ +L+DGFPRN    +  +  + +I    E VL  +  +E +  R+L R  GR+DDN   I+ R K++ + + P+V +Y+ +G ++ I+    V +V   +K
Sbjct:    8 LGPPGAGKGTQASLICKDQGFLHLSTGDLLREEVSGGTDLGKKAELIMNKGELVSDEIVISIVEKRLIKY-SEGWLLDGFPRNLAQASLLQNLLGRISQPIEIVLLIEIDDEILTERMLGR--GRKDDNKAVIKNRLKIYKDQTSPLVDHYKKQGILKSINGCGSVEDVNSRIK 178          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_NATPD (Adenylate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 63/197 (31.98%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNHG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 703
            LG PG+GKGTQ +NIV+ +G  H++ GD LRA     +E+GT  +  ++ G++VP  V  +++Q A++E+  D F++DG+PRN         +T +  + V   D   +E+  R+  R                            R+DD  ET+ +R  VF E++ PV+ YYE +G++ +ID      EV+D ++A
Sbjct:    9 LGAPGAGKGTQSSNIVDEYGVDHITTGDALRANKDMETEHGTP-REFMEAGELVPDPVVNEIVQAAIDEA--DGFVLDGYPRNLSQAEYLSDITDV--DVVALLDVGRDELVDRLTGRRMDPETGDIYHTEFNMPDDEEVRERLVQRDDDTEETVNERLDVFDENTQPVIDYYEDEGELVRIDGEASPDEVWDDLQA 200          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD2_CAEEL (Adenylate kinase 2, mitochondrial OS=Caenorhabditis elegans GN=let-754 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 71/218 (32.57%), Postives = 108/218 (49.54%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNH-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV---FDAVKAVFTPKDEKAA 733
            +G PGSGKGTQ     + +   HL+ GDLLRAE+ SGSE G  ++  +  GK+V  EV  KL+++ +E+      F++DGFPR        + +    K   + V+ F+ +++ + RRI  R                                R DDN ET+RKR   + + ++P+V YY+  G    +DAAKP+ +V    D V A FT K E+ +
Sbjct:   32 IGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAEVASGSEFGKELKATMDAGKLVSDEVVCKLIEQKLEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIADDLLVRRITGRLFHIASGRSYHLEFKPPKVPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDYYKKHGVHVAVDAAKPMTDVKAHIDQVFAKFTQKKERVS 249          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_STRA5 (Adenylate kinase OS=Streptococcus agalactiae serotype V GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 68/213 (31.92%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNHG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 718
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + EVF D  KA+   K
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK 212          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_STRA3 (Adenylate kinase OS=Streptococcus agalactiae serotype III GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 68/213 (31.92%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNHG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 718
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + EVF D  KA+   K
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK 212          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_HYDS0 (Adenylate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 59/205 (28.78%), Postives = 103/205 (50.24%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------HGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 706
            LG PGSGKGTQ A +     + H+S GD+LRAE+   S  G   +  +K+G +VP ++ I +++  + E+ +  ++ DGFPRN     AFE +    +++ + V +FD  ++ + +R+  R                                R+DD  E I  R +V+ E + P+++YY+ K K+  + A     EVF+ +K++
Sbjct:    6 LGPPGSGKGTQGALLKSELSFEHISTGDMLRAEVSKKSPLGLKAEEYMKQGLLVPDDLIIAMIKNILTEAPHKNYVFDGFPRNVNQAEAFETMLNTMRLQVDKVFYFDLEDDVIIKRLSGRRVCPKCGATYNIYYQKPKNDTLCDNDATPLIQRDDDKEEVIVNRLRVYKEQTFPLIEYYKYKNKLFVVSADGTQEEVFEKLKSM 210          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_ECO8A (Adenylate kinase OS=Escherichia coli O8 (strain IAI1) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-HG----------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEV 685
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E  ++ FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R  H                             R+DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCHNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_CORK4 (Adenylate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 67/183 (36.61%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNHGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV----FDAVKAV 706
            LG PG+GKGTQ A + +  G  H+S GDL R  I + +E G   ++ I  GK+VP+ VT+ +++ +  ++   D FL+DGFPR  E     + +     TK++   VL FD SE+ +  R+L R  GR DD  E IR R KV+ + + P+++YY  K  + +I A   V ++     +A+KA+
Sbjct:    6 LGPPGAGKGTQAAILSDKLGVPHVSTGDLFRENIGNNTELGQEAKSYIDAGKLVPTSVTVNMVKDRLSQDDAADGFLLDGFPRTVEQGDELKNILDGLGTKLDA--VLQFDVSEDVVVERMLAR--GRADDTEEVIRTRLKVYRDETAPLLEYY--KDSIIRIVAEGSVEDINERTMEALKAL 182          
BLAST of DN617582 vs. ExPASy Swiss-Prot
Match: KAD_SHIF8 (Adenylate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=adk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 69/201 (34.33%), Postives = 102/201 (50.75%), Query Frame = 2
Query:  188 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-HG----------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEV 685
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R  H                             R+DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
The following BLAST results are available for this feature:
BLAST of DN617582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_ECO271.428e-2233.65Adenylate kinase OS=Escherichia coli O127:H6 (stra... [more]
KAD_PROMA1.865e-2233.33Adenylate kinase OS=Prochlorococcus marinus GN=adk... [more]
KAD_NATPD1.865e-2231.98Adenylate kinase OS=Natronomonas pharaonis (strain... [more]
KAD2_CAEEL1.865e-2232.57Adenylate kinase 2, mitochondrial OS=Caenorhabditi... [more]
KAD_STRA52.436e-2231.92Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_STRA32.436e-2231.92Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_HYDS02.436e-2228.78Adenylate kinase OS=Hydrogenobaculum sp. (strain Y... [more]
KAD_ECO8A2.436e-2234.33Adenylate kinase OS=Escherichia coli O8 (strain IA... [more]
KAD_CORK42.436e-2236.61Adenylate kinase OS=Corynebacterium kroppenstedtii... [more]
KAD_SHIF83.182e-2234.33Adenylate kinase OS=Shigella flexneri serotype 5b ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617582 ID=DN617582; Name=DN617582; organism=Citrus sinensis; type=EST; length=755bp
CATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAA
ACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAG
TTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGC
TACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAG
GCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATAC
ACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTC
TGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTC
CTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGA
AATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGC
TGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTG
ACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCACGGA
AGAGAAGATGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTT
AGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAAGTTC
GGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGTTAAA
GCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTCTCTGT
CCAGA
back to top