DN617575

Overview
NameDN617575
Unique NameDN617575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12382 contig Csv1_Contig12382:945..1524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617575 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = -2
Query:  211 YDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 573
            +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       ++  G+A    K FK
Sbjct:  309 FDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
BLAST of DN617575 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = -2
Query:  211 DMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 579
            D +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  315 DHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWDFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFCWEGAFQHVGKAFNQGKIFK 440          
BLAST of DN617575 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 40/125 (32.00%), Postives = 70/125 (56.00%), Query Frame = -2
Query:  211 YDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 573
            ++ EG+S+W+ +YK+ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++  F + E +  D E Y W+K +   EE +  V +       F+  G+A    K FK
Sbjct:  314 FEKEGWSIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKLESDSEECRTMVKEYFAWEGEFKHVGKAFNQGKIFK 437          
BLAST of DN617575 vs. ExPASy Swiss-Prot
Match: EF1G2_YEAST (Elongation factor 1-gamma 2 OS=Saccharomyces cerevisiae GN=TEF4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 47/126 (37.30%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  211 YDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEI-PKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPF----EGEALLDAKCFK 573
            Y+PE YS+W   YKYNDE T++F++ N V GF  R+  + KY FG +++ G      + G  + RG +  P F  D   D E Y++ K D + EE KE VN M    +P     E + ++D K  K
Sbjct:  289 YNPEEYSIWKVGYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DVAPDWESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412          
BLAST of DN617575 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = -2
Query:  211 YDPEGYSLWFCDYKY-NDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPE-IPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 573
            +DPE YS+W  DY Y  D     F+T N + GF QR++ +RKY FG  ++IG      + G ++ +G + +P F  D   D   Y + K DI+  E K  +       +P EG  + D K  K
Sbjct:  289 FDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWGSYTFTKLDINKPEDKAFIEDAWAWDKPIEGREVADGKVCK 409          
The following BLAST results are available for this feature:
BLAST of DN617575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_PIG3.895e-1532.26Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_BOVIN6.644e-1533.33Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1GB_XENLA6.644e-1532.00Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G2_YEAST6.644e-1537.30Elongation factor 1-gamma 2 OS=Saccharomyces cerev... [more]
EF1G_SCHPO1.061e-1234.15Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617575 ID=DN617575; Name=DN617575; organism=Citrus sinensis; type=EST; length=580bp
AAAATTTAAGTATATACATTCAAGAACCATTGAAACTTGTATTAAAAAGA
TGTCCAAATCATCCTCAAAATTGCGACAAAATTATAAGTTAATACTATAA
CACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACACAAACAAACTC
TACCAATAACCAAAGACAAACATGAACATCTTAAAACTAGAAAAAAGATT
AAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTCACCCTCAAAA
GGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTTGCTCTTCGTC
TGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCATAGCACTCAT
CCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCACAACCCCTTG
ACTTTGTATGGAGGCTCGTTGCCGATAATTAGCATCTTTCCAAACGCATA
CTTGCGAGCCAGATCCATCCTCTGAAGAAACCCACTAACCTTGTTCAAGG
TCACGAATGACACAGTATTCTCGTCATTGTATTTGTAATCACAGAACCAA
AGTGAGTAACCCTCAGGATCATACATGTCC
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