DN617571 | Citrus Genome Database

Overview


Name	DN617571
Unique Name	DN617571
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	637

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig539	contig	Csv1_Contig539:59..685.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 6.885e-67
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 8.992e-67
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 8.992e-67
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLRFQS AV ALQEA+E+YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 252.677 bits (644), Expect = 1.174e-66
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.174e-66
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.174e-66
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 251.906 bits (642), Expect = 2.003e-66
Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 4.463e-66
Identity = 126/135 (93.33%), Postives = 133/135 (98.52%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 437
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.696e-65
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ  AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617571 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.696e-65
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 3

Query:   33 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 440
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135

The following BLAST results are available for this feature:

BLAST of DN617571 vs. ExPASy Swiss-Prot

BLAST of DN617571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212


Match Name	E-value	Identity	Description
H33_PONAB	6.885e-67	94.85	Histone H3.3 OS=Pongo abelii PE=2 SV=3	[more]
H3_STRPU	8.992e-67	94.85	Histone H3, embryonic OS=Strongylocentrotus purpur...	[more]
H32_LILLO	8.992e-67	94.85	Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV...	[more]
H3_CAEEL	1.174e-66	94.12	Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1...	[more]
H3L1_ARATH	1.174e-66	94.85	Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1...	[more]
H31_CHLRE	1.174e-66	96.32	Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=...	[more]
H31T_HUMAN	2.003e-66	93.38	Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3	[more]
H3_GRIJA	4.463e-66	93.33	Histone H3 OS=Griffithsia japonica PE=2 SV=3	[more]
H3L_XENLA	1.696e-65	92.65	Histone H3-like OS=Xenopus laevis PE=1 SV=2	[more]
H33_CHLRE	1.696e-65	95.59	Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_01G07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN617571 ID=DN617571; Name=DN617571; organism=Citrus sinensis; type=EST; length=637bp
ATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAA
ACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCAC
AAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAAGAAGCCCC
ATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAA
AAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCG
TGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGG
TTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAG
GACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAA
GGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGA
TTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTAT
TTCGGTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGC
ATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCAC
TTTACCTTCATCGGTGGTTTTAAGGACTTGCGTGTAT