DN617570
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3) HSP 1 Score: 163.31 bits (412), Expect = 9.275e-40 Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = -2 Query: 280 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED---TNLCAIHAK 627 MARTK+TA KSTGGK PRKQL +AA KSAP+T G+ KPHRYRPGTVALREIR YQKST LIRKLPFQRLVREIAQDFKTDL+FQS A+ LQEA+EAYLV E +NL ++++ Sbjct: 1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQSAAIRTLQEASEAYLVVFLESKQHSNLARMYSQ 119
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 3.897e-38 Identity = 91/136 (66.91%), Postives = 100/136 (73.53%), Query Frame = -2 Query: 223 MARTK-QTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 627 MARTK R S K +A KAA+K KK R PG VAL EI+ Q+STELL+RK PFQ LVREIAQ K+DLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKR+TIMPKD+QLARRIRGER Sbjct: 1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.134e-37 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -2 Query: 220 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 459 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3) HSP 1 Score: 155.221 bits (391), Expect = 2.526e-37 Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = -2 Query: 229 MARTKQTARKSTGGKAPRKQLATKAARKSAPTT-----------------------GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 627 MAR K AR STGGKAPRKQLA KA RK+AP T GVK+PHRYRPG + LREIRKY+K+ I KLPF RLVR+I Q+ K LRFQS A+ A +E +EAYLV LFED AIHAKRVT++PKDIQLAR I G Sbjct: 1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.614e-34 Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = -2 Query: 229 MARTKQTARKSTGGKAP------RKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 627 + ++K ++K+ P R++ + + P G K+ RYRPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA F+ ++R+QS A+LALQEAAEA+LV LFEDTNLCAIHAKRVTIM KDIQLARRIRG Sbjct: 8 VTKSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.459e-34 Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = -2 Query: 223 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR-YRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 627 M+RTK+TAR ++ + +K ++K+ GVK+ HR +RPGT A+REIRK+QKST LLI+ PFQRLVR + + K LRFQS A++ALQEA EAY+V L DTNL IHAKRVTI PKDIQLA R+RGER Sbjct: 1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.297e-33 Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = -2 Query: 226 TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 534 T VKK RYRPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF LR+QS+A+LALQEA+E++L+ L EDTNLCAIHAKRVTIM KDIQLARRIRG+ Sbjct: 104 TVPRVKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.098e-32 Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = -2 Query: 229 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 621 R T R+ + + ++ R S P+ +K H++RPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F + + +Q +A++ALQEAAEA++V LF D NLCAIHAKRVT+ P+DIQLARRIRG Sbjct: 10 RKPSTPRRRSPPASLPPPAGSRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.447e-32 Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = -2 Query: 229 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 507 RYRPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++ +R+QS+AVLALQEA EA+LV L EDTNLCAIHAKRVTIM KDIQLARRIRG Sbjct: 61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.586e-31 Identity = 72/138 (52.17%), Postives = 94/138 (68.12%), Query Frame = -2 Query: 226 VMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 630 V+ R + A + R++ + T KKP RYRP VAL+EIR+YQ+STELLI ++PF RLV+E+ F T +R+QS A+LALQEA+EAY+VGL E TNL A+HAKRVT+M KD+QLARRIRG+ Sbjct: 65 VVERVAEPAAAESRADGAREEERPARPARPRETRRIAKKPQRYRPSDVALQEIRRYQRSTELLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQLARRIRGQ 202 The following BLAST results are available for this feature:
BLAST of DN617570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 212
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617570 ID=DN617570; Name=DN617570; organism=Citrus sinensis; type=EST; length=631bpback to top |