DN617570

Overview
NameDN617570
Unique NameDN617570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETMI (Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETMA (Histone H3.2 (Fragment) OS=Tetrahymena malaccensis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETLE (Histone H3.2 (Fragment) OS=Tetrahymena leucophrys PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = -2 
Query:  505 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 627
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of DN617570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETMI3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=... [more]
H32_TETMA3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena malaccensis... [more]
H32_TETLE3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena leucophrys ... [more]
H32_TETHY3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM3.924e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617570 ID=DN617570; Name=DN617570; organism=Citrus sinensis; type=EST; length=631bp
AAATAAAATTAGCCGAAAATCCATACACGCAAGTCCTTAAAACCACCGAT
GAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACATTTATCTAGCAA
ATATCAAATGCCAAATATTCTTCAATCCATCATATCATTCTTTACATGTA
AAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGAAACTGACGACTA
CCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTCGCCTTGCCAGT
TGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATGGATAGCACAAAG
GTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGCCGCTTCCTGCA
GCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCTTGAAATCTTGA
GCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGCGGATCAAAAGCTC
AGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCGACAGTTCCTGGAC
GGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGGAGCAGATTTTCTT
GCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCTCCAGTTGACTT
GCGCGCGGTTTGCTTCGTACGGGCCATTACT
back to top