DN617570 | Citrus Genome Database

Overview


Name	DN617570
Unique Name	DN617570
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	631

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 4.720e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 4.720e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.720e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.720e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 4.720e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKS GGKAPR  LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DN617570 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = -2

Query:  220 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 627
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of DN617570 vs. ExPASy Swiss-Prot

BLAST of DN617570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212


Match Name	E-value	Identity	Description
H31_RAT	4.720e-68	96.32	Histone H3.1 OS=Rattus norvegicus PE=1 SV=3	[more]
H31_MUSPA	4.720e-68	96.32	Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3	[more]
H31_MOUSE	4.720e-68	96.32	Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2	[more]
H31_HUMAN	4.720e-68	96.32	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	[more]
H31_BOVIN	4.720e-68	96.32	Histone H3.1 OS=Bos taurus PE=1 SV=2	[more]
H3L3_ARATH	6.164e-68	96.32	Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7...	[more]
H32_WHEAT	6.164e-68	97.06	Histone H3.2 OS=Triticum aestivum PE=1 SV=2	[more]
H32_PEA	6.164e-68	97.06	Histone H3.2 OS=Pisum sativum PE=1 SV=2	[more]
H32_ONOVI	6.164e-68	97.06	Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2	[more]
H32_MEDSA	6.164e-68	97.06	Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_01G07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN617570 ID=DN617570; Name=DN617570; organism=Citrus sinensis; type=EST; length=631bp
AAATAAAATTAGCCGAAAATCCATACACGCAAGTCCTTAAAACCACCGAT
GAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACATTTATCTAGCAA
ATATCAAATGCCAAATATTCTTCAATCCATCATATCATTCTTTACATGTA
AAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGAAACTGACGACTA
CCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATTCGCCTTGCCAGT
TGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATGGATAGCACAAAG
GTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCTGCCGCTTCCTGCA
GCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGTCTTGAAATCTTGA
GCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGCGGATCAAAAGCTC
AGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCGACAGTTCCTGGAC
GGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGGAGCAGATTTTCTT
GCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTCCTCCAGTTGACTT
GCGCGCGGTTTGCTTCGTACGGGCCATTACT