DN617568

Overview
NameDN617568
Unique NameDN617568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:88..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 308
            K YTL E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 320
            KVY+  EV+ HN  ++ W+II+ KVYDV++F D+HPGGDE+++   G+DAT+ F D+GHS  A  ++   Y+GD+D ++
Sbjct:    3 KVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS 81          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYN-QDKTPEFIIKLLQFLVPLLILGL 437
            K +T AEV+ +N +   W II   VYDVT FL++HPGG+EVL+   GKDAT+ FEDVGHSS A+ MM ++ VG++               +P +N + KT E  +K   +L+P  +LGL
Sbjct:    7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL---VAEERSNVPEKSEPTWNTEQKTEESSMK--SWLMP-FVLGL 119          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   75 GEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 317
            G  + YT+ EV+ HN  + CW +  GKVYD T +LD+HPGG E +L   G DATD+F  + HSS AKAM+ ++Y+GD+ +S
Sbjct:  495 GGPRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVAS 574          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 308
            K YTL E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 308
            K YTL E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   84 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 308
            K  T+ EV  HN R D +++++ KVYD++KFLD HPGG+EVL+   G+DA+  FEDVGHS  A+ ++++FY+G++
Sbjct:    4 KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 3
Query:   78 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI--DSS 317
            E K +TLA++S H  +   +L I GKVYD T F+D+HPGG+EVL+   G+DAT+ FEDVGHS  A+ +M +  VG+   DSS
Sbjct:    3 ELKSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSS 84          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   90 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 308
            +T  +V+ HN +KD +++I  KVYD+TKF+D+HPGG+EVLL   G+D+T+ FEDVGHS  A+  ++   VG +
Sbjct:    5 FTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTL 77          
BLAST of DN617568 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 32/79 (40.51%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   87 VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTV 323
            +YT  EV+ H    D W+I+ GKVY+++ ++D+HPGG+EV+L   G DAT+ F+D+GHS  A  ++++ Y+G++  + +
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKI 88          
The following BLAST results are available for this feature:
BLAST of DN617568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB5_RABIT1.119e-1853.33Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_YEAST1.908e-1846.84Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_MUSDO1.908e-1843.70Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
NIA_VOLCA3.255e-1849.38Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_RAT4.251e-1850.67Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_MOUSE4.251e-1850.67Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB52_SCHPO4.251e-1849.33Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_MORAP3.599e-1751.22Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
CYB5_NEUCR4.700e-1749.32Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_CANTR4.700e-1740.51Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617568 ID=DN617568; Name=DN617568; organism=Citrus sinensis; type=EST; length=618bp
CTGGTACTCACCTACTGGGGCATAAAAGTTTCAAGCTTTTCCCTTAAAAA
TCTCACCTTTTTTTACAAATGGGCGGAGAGGGCAAGGTATACACTTTGGC
TGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATCATTGAGG
GCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGGTGGAGAC
GAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACTTTGAGGA
TGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTCTATGTGG
GTGACATTGATTCATCAACCGTTCCCACCAAGACCAAGTACACCCCTCCC
AAGCAGCCTCACTACAACCAAGACAAGACACCCGAGTTTATTATAAAGCT
CCTCCAGTTCCTAGTTCCTCTGCTAATCTTAGGATTGGCTGTTGGCATCC
GCTTCTATACCAAATCCGCTTAATGATACCTTGCAAGATAAAAATTGGAG
AAACATTTACAATAAATCTATATCCGTTGCATTGCACCTTGTTTTTACTA
GTTGTTTGGAACTATTATCACCAGAAAATGTAGGGTTCTTTATCTTTTTT
GATGTCATGTGCTTGTGT
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