DN617558

Overview
NameDN617558
Unique NameDN617558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  348 LVKHGPLAVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 605
            L K GP++V INA  MQ Y  G+S P   +C  +L DH VL+VGYG+         + P+W IKNSWG +WGE GYY +  G   CGV+
Sbjct:  394 LAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRS-------DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVN 475          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  348 LVKHGPLAVGINAVWMQTYIGGVSCPY--ICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 605
            L + GP++V INA  MQ Y  G++ P+  +C   ++DH VL+VGYG+           PYW IKNSWG +WGE GYY +  G   CGV+
Sbjct:  372 LAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVN 453          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = -3
Query:  357 KHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 599
            K GP+AV ++A   Q Y GGV    +    L+HGVLIVG+  +        + PYWI+KNSWG +WGE GY ++ MG N C
Sbjct:  258 KRGPVAVAVDATTWQLYFGGVVSLCLAWS-LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQC 330          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = -3
Query:  357 KHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 599
            K GP+AV ++A   Q Y GGV    +    L+HGVLIVG+  +        + PYWI+KNSWG +WGE GY ++ MG N C
Sbjct:  258 KRGPVAVAVDATTWQLYFGGVVSLCLAWS-LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQC 330          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = -3
Query:  357 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 605
            L  +GP+AV ++A    TY GGV    +  + LDHGVL+VGY  S   P       YWIIKNSW   WGE GY +I  G N C
Sbjct:  251 LAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYNDSAAVP-------YWIIKNSWTTQWGEEGYIRIAKGSNQC 325          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGV--SCPYICG-KYLDHGVLIVGYGSS----------GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L  HGP+ V IN   +Q Y  GV  + P  C  + +DH VL+VG+G              +  R    PYWI+KNSWG +WGE GY+++  G N CGV
Sbjct:  252 LAVHGPITVTINMKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV 349          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L+  GPL V ++AV  Q Y+GG+   +      +H VLI G+  +G         PYWI++NSWG +WG +GY  + MG NVCG+
Sbjct:  235 LLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDKTG-------STPYWIVRNSWGSSWGVDGYAHVKMGSNVCGI 312          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L K+GP+AV I+ V +  Y  G++   +C    L+H VL+VGYG          + PYWI KNSWG NWGENGY++     N CG+
Sbjct:  250 LYKNGPIAVAIDCVDIIDYRSGIAT--VCNDNGLNHAVLLVGYGIEN-------DTPYWIFKNSWGSNWGENGYFRARRNINACGM 326          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = -3
Query:  357 LVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 605
            L ++GPLA+ ++A     Y GG+  SC     K LDHGVL+VGY  +          PYWIIKNSW   WGE+GY +I  G N C
Sbjct:  254 LAENGPLAIAVDAESFMDYNGGILTSCT---SKQLDHGVLLVGYNDNS-------NPPYWIIKNSWSNMWGEDGYIRIEKGTNQC 328          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYL-DHGVLIVGYGSS-----------GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L   GP+ V IN   ++ Y  GV  + P  C  +L DH VL+VG+G S           G  P   +  P+WI+KNSWG  WG  GY+++  G N CG+
Sbjct:  254 LATQGPITVTINMKLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI 352          
The following BLAST results are available for this feature:
BLAST of DN617558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CATF_HUMAN8.709e-1647.19Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATF_MOUSE1.486e-1544.94Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
LMCPA_LEIME2.802e-1445.68Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI2.802e-1445.68Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CYSP_TRYCR8.151e-1446.99Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATW_MOUSE8.151e-1440.82Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATO_HUMAN1.065e-1341.18Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CATV_NPVST1.816e-1344.19Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CYSP_TRYBB2.372e-1345.88Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATW_FELCA9.013e-1338.38Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617558 ID=DN617558; Name=DN617558; organism=Citrus sinensis; type=EST; length=610bp
TCTACTANTTTTGAGTTACATAAAAAGAAAATATAACATTATAATATTTC
TACAAGCCTGCCCAATATAAAAAGAAAATATTAATACCATCTTCAATAAC
AATTCTGTAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACA
TGACATATGCTTAAATATTACAAGAGCATATAAAGTTCATGCCTCAGCCC
ACGCATGTAGGCATCCTTATAATTGCAGACGGCTATTTAAAAGGATATCC
TATAATATCTTCGTATATAAGCTCCACTTGCCTAGCACAACCTCCATAAT
GTCTAGCTTGAGGTTGTATGGACAGCAGCTACAGATGAGACCATGGAGTC
GACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCTC
CCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTTG
AAACGGATCGGGGCGAAACCTGAAGATCCATAGCCCACGATAAGCACTCC
ATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATAT
ATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTTC
ACCAAATTTG
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