DN617558

Overview
NameDN617558
Unique NameDN617558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L+  GPL V ++A+  Q Y+GG+   +      +H VLI G+  +G         PYW+++NSWG +WG  GY  + MG NVCG+
Sbjct:  226 LLSFGPLVVIVDAMSWQDYLGGIIQHHCSSGEANHAVLITGFDRTG-------NTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGI 303          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYL-DHGVLIVGYGS-------------SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L  +GP+ V IN   +Q Y  GV  + P  C   L DH VL+VG+GS             S   P      PYWI+KNSWG  WGE GY+++  G N CG+
Sbjct:  254 LATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI 354          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  351 NLVKH-GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 608
            +L++H GP+A+ ++AV +  Y GGV   +     L+H VL+VGYG            PYW IKNSWG ++GENGY +I  G N CG+
Sbjct:  248 DLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRGVNSCGM 326          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  348 LVKHGPLAVG--INAVWMQTYIG-----GVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 605
            LVKHGP+AV   ++  ++  + G     G+S P+   +  +H VL+VGYG      I      YWIIKNSWG NWGE+GY++I  G + C ++
Sbjct:  363 LVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIE-----YWIIKNSWGSNWGESGYFRIRRGTDECAIE 450          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = -3
Query:  351 GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 593
            GP+A+ ++AV +  Y GG+   +     L+H VL+VGYG            PYWIIKNSWG ++GE+GY ++  G N CG+
Sbjct:  254 GPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVEN-------NVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGM 326          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  348 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 605
            L+  GP+A+ I+A  + TY  G+   + C    L+H VL+VGYG+ G          YW +KNSWG +WGE+GY+++    N CG++
Sbjct:  250 LITMGPIAMAIDAASISTYSKGII--HFCENLGLNHAVLLVGYGTEGGVS-------YWTLKNSWGSDWGEDGYFRVKRNINACGLN 327          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            LV +GP++V I+   +  Y  G++      + L+H VL+VGYG          + PYWI+KNSWG  WGE GY+++   +N CG+
Sbjct:  246 LVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKN-------DVPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = -3
Query:  351 GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 593
            GP+ V I+A  +  Y  G+   Y     L+H VL+VGYG            PYWI+KNSWG +WGE G++KI    N CG+
Sbjct:  240 GPIPVAIDASDILNYEQGI-IKYCANNGLNHAVLLVGYGVEN-------NVPYWILKNSWGTDWGEQGFFKIQQNVNACGI 312          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  351 PLAVGINAVW-MQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 590
            P++V    V   + Y  GV     CG     ++H VL VGYG          + PYW+IKNSWG  WG+NGY+K+ MG+N+CGV
Sbjct:  272 PVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVED-------DVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGV 348          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  351 PLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 590
            P++V    V   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WGE+GY+K+ MG+N+CGV
Sbjct:  270 PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTP-------YWLIKNSWGADWGEDGYFKMEMGKNMCGV 346          
The following BLAST results are available for this feature:
BLAST of DN617558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CATO_MOUSE9.013e-1338.82Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATW_HUMAN1.177e-1240.59Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATV_NPVMC1.177e-1243.68Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATC_MOUSE2.008e-1240.86Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATV_NPVSE5.842e-1241.98Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVAH5.842e-1239.08Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATV_GVCP7.630e-1238.82Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATV_NPVEP1.700e-1141.98Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
ALEUL_ARATH1.700e-1142.86Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP3_SOLLC2.220e-1142.86Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617558 ID=DN617558; Name=DN617558; organism=Citrus sinensis; type=EST; length=610bp
TCTACTANTTTTGAGTTACATAAAAAGAAAATATAACATTATAATATTTC
TACAAGCCTGCCCAATATAAAAAGAAAATATTAATACCATCTTCAATAAC
AATTCTGTAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACA
TGACATATGCTTAAATATTACAAGAGCATATAAAGTTCATGCCTCAGCCC
ACGCATGTAGGCATCCTTATAATTGCAGACGGCTATTTAAAAGGATATCC
TATAATATCTTCGTATATAAGCTCCACTTGCCTAGCACAACCTCCATAAT
GTCTAGCTTGAGGTTGTATGGACAGCAGCTACAGATGAGACCATGGAGTC
GACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCTC
CCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTTG
AAACGGATCGGGGCGAAACCTGAAGATCCATAGCCCACGATAAGCACTCC
ATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATAT
ATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTTC
ACCAAATTTG
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